Literature DB >> 24817278

Genetic characterization and structure of the endemic Colombian silvery brown bare-face tamarin, Saguinus leucopus (Callitrichinae, Cebidae, Primates).

Manuel Ruiz-García1, Pablo Escobar-Armel, Norberto Leguizamon, Paola Manzur, Myreya Pinedo-Castro, Joseph M Shostell.   

Abstract

We analyzed 115 Saguinus leucopus, from four Colombian departments (Antioquia, Bolivar, Caldas and Tolima ), for 701 bp of the mt COII gene and at 10 microsatellite loci to estimate gene diversity levels, possible molecular subspecies and historical demographic changes in this species. This endemic Colombian species showed an elevated gene diversity in this gene, although its geographical distribution is very restrictive and extremely threatened by habitat fragmentation. The mt COII gene did not show any geographical structure in the distribution of the haplotypes within this species, but it did show a noteworthy population expansion throughout the history of this species. A Bayesian analysis showed that the haplotype diversification of this species began around 1.6 million years ago (MYA), whilst a haplotype network gave the beginning of this diversification at around 0.5-0.6 MYA. Forty-seven individuals out of the 115 were analyzed for 10 DNA microsatellites. The genetic diversity was relatively elevated for this kind of marker too, and comparable to that found in other Neotropical monkeys with a wider geographical distribution. Two gene pools were detected with the microsatellites, one in the northern distribution area (Antioquia) and the other in the southern distribution area (Tolima). No tests detected any bottleneck affecting this population; however, two procedures (k test and Kimmel et al. 1998 test) detected significant population expansion for the microsatellite markers, like that seen with the mt COII gene.

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Year:  2014        PMID: 24817278     DOI: 10.1007/s10329-014-0418-2

Source DB:  PubMed          Journal:  Primates        ISSN: 0032-8332            Impact factor:   2.163


  75 in total

1.  Inference of population structure using multilocus genotype data.

Authors:  J K Pritchard; M Stephens; P Donnelly
Journal:  Genetics       Date:  2000-06       Impact factor: 4.562

2.  Inference of population structure using multilocus genotype data: linked loci and correlated allele frequencies.

Authors:  Daniel Falush; Matthew Stephens; Jonathan K Pritchard
Journal:  Genetics       Date:  2003-08       Impact factor: 4.562

3.  Comparison of Bayesian and maximum-likelihood inference of population genetic parameters.

Authors:  Peter Beerli
Journal:  Bioinformatics       Date:  2005-11-29       Impact factor: 6.937

4.  Speciation in amazonian forest birds.

Authors:  J Haffer
Journal:  Science       Date:  1969-07-11       Impact factor: 47.728

5.  Strategy using pooled DNA to identify 56 short tandem repeat polymorphisms for the Bolivian squirrel monkey.

Authors:  F Zhong; A G Brady; J Shi; C R Abee; C C McCombs; J P Michalski
Journal:  Biotechniques       Date:  1996-10       Impact factor: 1.993

6.  Statistical method for testing the neutral mutation hypothesis by DNA polymorphism.

Authors:  F Tajima
Journal:  Genetics       Date:  1989-11       Impact factor: 4.562

7.  Statistical tests of neutrality of mutations.

Authors:  Y X Fu; W H Li
Journal:  Genetics       Date:  1993-03       Impact factor: 4.562

8.  A measure of population subdivision based on microsatellite allele frequencies.

Authors:  M Slatkin
Journal:  Genetics       Date:  1995-01       Impact factor: 4.562

9.  Accuracy of estimated phylogenetic trees from molecular data. II. Gene frequency data.

Authors:  M Nei; F Tajima; Y Tateno
Journal:  J Mol Evol       Date:  1983       Impact factor: 2.395

10.  Mitochondrial DNA phylogeny of the Old-World monkey tribe Papionini.

Authors:  T R Disotell; R L Honeycutt; M Ruvolo
Journal:  Mol Biol Evol       Date:  1992-01       Impact factor: 16.240

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  1 in total

1.  Sperm Morphology in Neotropical Primates.

Authors:  Eliana R Steinberg; Adrián J Sestelo; María B Ceballos; Virginia Wagner; Ana M Palermo; Marta D Mudry
Journal:  Animals (Basel)       Date:  2019-10-21       Impact factor: 2.752

  1 in total

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