Literature DB >> 24817150

Species identification from hair by means of spectral library searches.

Katleen Van Steendam1, Odile De Wulf, Maarten Dhaenens, Dieter Deforce.   

Abstract

Species identification from hair has been performed in the past by several techniques, such as scanning electron microscopy and polymerase chain reaction. Despite the great promise of mass spectrometry herein, the repetitive glycine stretches and the evolutionary conserved sequences of keratins make the results from conventional database search algorithms on MSMS fragmentation data very ambiguous. Here, we present a new method based on electron spray quadrupole time-of-flight (ESI-Q-TOF) mass spectrometry and spectral library searching. By comparing different sets of data processing parameters, spectral libraries for human, cat, and dog were constructed with the highest possible specificity and sensitivity. This proof of principle was confirmed by the annotation of blind samples. In addition, by providing a step-by-step roadmap for creating such libraries, more species can be included in the future as demonstrated here by the inclusion of sheep and rabbit. Additionally, we illustrate that this approach allows for species identification of a single hair, making this an interesting approach in a forensic setting.

Entities:  

Mesh:

Year:  2014        PMID: 24817150     DOI: 10.1007/s00414-014-1008-y

Source DB:  PubMed          Journal:  Int J Legal Med        ISSN: 0937-9827            Impact factor:   2.686


  9 in total

1.  Species identification by means of the cytochrome b gene.

Authors:  W Parson; K Pegoraro; H Niederstätter; M Föger; M Steinlechner
Journal:  Int J Legal Med       Date:  2000       Impact factor: 2.686

2.  Identification and quantification of feathers, down, and hair of avian and mammalian origin using matrix-assisted laser desorption/ionization time-of-flight mass spectrometry.

Authors:  Klaus Hollemeyer; Wolfgang Altmeyer; Elmar Heinzle
Journal:  Anal Chem       Date:  2002-12-01       Impact factor: 6.986

3.  Matrix-assisted laser desorption/ionization time-of-flight mass spectrometry combined with multidimensional scaling, binary hierarchical cluster tree and selected diagnostic masses improves species identification of Neolithic keratin sequences from furs of the Tyrolean Iceman Oetzi.

Authors:  Klaus Hollemeyer; Wolfgang Altmeyer; Elmar Heinzle; Christian Pitra
Journal:  Rapid Commun Mass Spectrom       Date:  2012-08-30       Impact factor: 2.419

4.  Single nucleotide polymorphism for animal fibre identification.

Authors:  Selvi Subramanian; T Karthik; N N Vijayaraaghavan
Journal:  J Biotechnol       Date:  2004-12-24       Impact factor: 3.307

5.  Species identification of Oetzi's clothing with matrix-assisted laser desorption/ionization time-of-flight mass spectrometry based on peptide pattern similarities of hair digests.

Authors:  Klaus Hollemeyer; Wolfgang Altmeyer; Elmar Heinzle; Christian Pitra
Journal:  Rapid Commun Mass Spectrom       Date:  2008-09       Impact factor: 2.419

6.  A rapid extraction procedure of human hair proteins and identification of phosphorylated species.

Authors:  Akira Nakamura; Makoto Arimoto; Keiji Takeuchi; Toshihiro Fujii
Journal:  Biol Pharm Bull       Date:  2002-05       Impact factor: 2.233

7.  Modification of citrulline residues with 2,3-butanedione facilitates their detection by liquid chromatography/mass spectrometry.

Authors:  Marlies De Ceuleneer; Vanessa De Wit; Katleen Van Steendam; Filip Van Nieuwerburgh; Kelly Tilleman; Dieter Deforce
Journal:  Rapid Commun Mass Spectrom       Date:  2011-06-15       Impact factor: 2.419

8.  Open MS/MS spectral library search to identify unanticipated post-translational modifications and increase spectral identification rate.

Authors:  Ding Ye; Yan Fu; Rui-Xiang Sun; Hai-Peng Wang; Zuo-Fei Yuan; Hao Chi; Si-Min He
Journal:  Bioinformatics       Date:  2010-06-15       Impact factor: 6.937

9.  Mass spectrometry-based proteomics as a tool to identify biological matrices in forensic science.

Authors:  Katleen Van Steendam; Marlies De Ceuleneer; Maarten Dhaenens; David Van Hoofstat; Dieter Deforce
Journal:  Int J Legal Med       Date:  2012-07-29       Impact factor: 2.686

  9 in total

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