Literature DB >> 24811091

A molecular phylogeny of Raddia and its allies within the tribe Olyreae (Poaceae, Bambusoideae) based on noncoding plastid and nuclear spacers.

Reyjane P Oliveira1, Lynn G Clark2, Alessandra S Schnadelbach3, Silvana H N Monteiro4, Eduardo L Borba5, Hilda M Longhi-Wagner6, Cassio van den Berg7.   

Abstract

The plastid spacer trnD-trnT and the nuclear ribosomal internal transcribed spacer (ITS) were sequenced for 37 samples of herbaceous bamboos (Poaceae: Olyreae), including all Raddia species and allied genera, as well as two members of the woody bamboos (tribes Bambuseae and Arundinarieae), in order to examine their relationships. The sequences were analyzed using maximum parsimony and Bayesian inference. Both the individual and combined analyses of ITS and trnD-trnT supported Olyreae as a monophyletic group. All species of Raddia also formed a well-supported monophyletic group, and combined datasets allowed us to outline some relationships within this group. Individual analyses indicated incongruence regarding the sister group of Raddia, with ITS data weakly indicating Raddiella malmeana whereas trnD-trnT data supported Sucrea maculata in this position. However, the combined analysis supported Sucrea as sister to Raddia, although the monophyly of Sucrea is not well supported. Parodiolyra is paraphyletic to Raddiella in all analyses; Olyra is also paraphyletic, with species of Lithachne, Arberella and Cryptochloa nested within it. Eremitis and Pariana appeared as an isolated clade within Olyreae, and the position of the New Guinean Buergersiochloa remains uncertain within this tribe.
Copyright © 2014 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  ITS; Incongruence; Neotropical grasses; Olyreae; Phylogenetic relationships; trnD-trnT

Mesh:

Substances:

Year:  2014        PMID: 24811091     DOI: 10.1016/j.ympev.2014.04.012

Source DB:  PubMed          Journal:  Mol Phylogenet Evol        ISSN: 1055-7903            Impact factor:   4.286


  8 in total

1.  A 250 plastome phylogeny of the grass family (Poaceae): topological support under different data partitions.

Authors:  Jeffery M Saarela; Sean V Burke; William P Wysocki; Matthew D Barrett; Lynn G Clark; Joseph M Craine; Paul M Peterson; Robert J Soreng; Maria S Vorontsova; Melvin R Duvall
Journal:  PeerJ       Date:  2018-02-02       Impact factor: 2.984

2.  Evidence for horizontal transfer of mitochondrial DNA to the plastid genome in a bamboo genus.

Authors:  Peng-Fei Ma; Yu-Xiao Zhang; Zhen-Hua Guo; De-Zhu Li
Journal:  Sci Rep       Date:  2015-06-23       Impact factor: 4.379

3.  Evolution of the bamboos (Bambusoideae; Poaceae): a full plastome phylogenomic analysis.

Authors:  William P Wysocki; Lynn G Clark; Lakshmi Attigala; Eduardo Ruiz-Sanchez; Melvin R Duvall
Journal:  BMC Evol Biol       Date:  2015-03-18       Impact factor: 3.260

4.  Whole-Genome Comparison Reveals Divergent IR Borders and Mutation Hotspots in Chloroplast Genomes of Herbaceous Bamboos (Bambusoideae: Olyreae).

Authors:  Wencai Wang; Siyun Chen; Xianzhi Zhang
Journal:  Molecules       Date:  2018-06-26       Impact factor: 4.411

5.  Notes on leaf micromorphology of the rare herbaceous bamboo Buergersiochloa bambusoides Pilg. (Olyreae, Poaceae) from New Guinea and its taxonomic implications.

Authors:  Jamile F Lima; Kelly Regina B Leite; Lynn G Clark; Reyjane P Oliveira
Journal:  PhytoKeys       Date:  2021-02-19       Impact factor: 1.635

6.  Comparative Plastomes and Phylogenetic Analysis of Cleistogenes and Closely Related Genera (Poaceae).

Authors:  Rong Wang; Kuan Liu; Xue-Jie Zhang; Wen-Li Chen; Xiao-Jian Qu; Shou-Jin Fan
Journal:  Front Plant Sci       Date:  2021-03-25       Impact factor: 5.753

7.  Draft genome of the herbaceous bamboo Raddia distichophylla.

Authors:  Wei Li; Cong Shi; Kui Li; Qun-Jie Zhang; Yan Tong; Yun Zhang; Jun Wang; Lynn Clark; Li-Zhi Gao
Journal:  G3 (Bethesda)       Date:  2021-02-09       Impact factor: 3.154

8.  The floral transcriptomes of four bamboo species (Bambusoideae; Poaceae): support for common ancestry among woody bamboos.

Authors:  William P Wysocki; Eduardo Ruiz-Sanchez; Yanbin Yin; Melvin R Duvall
Journal:  BMC Genomics       Date:  2016-05-20       Impact factor: 3.969

  8 in total

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