Literature DB >> 24796554

Characterization of a thermophilic bacteriophage of Geobacillus kaustophilus.

Timothy J Marks1, Paul T Hamilton.   

Abstract

GBK2 is a bacteriophage, isolated from a backyard compost pile, that infects the thermophile Geobacillus kaustophilus. GBK2 has a circularly permuted genome of 39,078 bp with a G+C content of 43 %. Annotation of the genome reveals 62 putative open reading frames (ORFs), 25 of which (40.3 %) show homology to known proteins and 37 of which (59.7 %) are proteins with unknown functions. Twelve of the identified ORFs had the greatest homology to genes from the phage SPP1, a phage that infects the mesophile Bacillus subtilis. The overall genomic arrangement of GBK2 is similar to that of SPP1, with the majority of GBK2 SPP1-like genes coding for proteins involved in DNA replication and metabolism.

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Year:  2014        PMID: 24796554     DOI: 10.1007/s00705-014-2101-8

Source DB:  PubMed          Journal:  Arch Virol        ISSN: 0304-8608            Impact factor:   2.574


  7 in total

1.  Ecogenomics and potential biogeochemical impacts of globally abundant ocean viruses.

Authors:  Simon Roux; Jennifer R Brum; Bas E Dutilh; Shinichi Sunagawa; Melissa B Duhaime; Alexander Loy; Bonnie T Poulos; Natalie Solonenko; Elena Lara; Julie Poulain; Stéphane Pesant; Stefanie Kandels-Lewis; Céline Dimier; Marc Picheral; Sarah Searson; Corinne Cruaud; Adriana Alberti; Carlos M Duarte; Josep M Gasol; Dolors Vaqué; Peer Bork; Silvia G Acinas; Patrick Wincker; Matthew B Sullivan
Journal:  Nature       Date:  2016-09-21       Impact factor: 49.962

2.  Three novel Pseudomonas phages isolated from composting provide insights into the evolution and diversity of tailed phages.

Authors:  Deyvid Amgarten; Layla Farage Martins; Karen Cristina Lombardi; Luciana Principal Antunes; Ana Paula Silva de Souza; Gianlucca Gonçalves Nicastro; Elliott Watanabe Kitajima; Ronaldo Bento Quaggio; Chris Upton; João Carlos Setubal; Aline Maria da Silva
Journal:  BMC Genomics       Date:  2017-05-04       Impact factor: 3.969

3.  Sequence, genome organization, annotation and proteomics of the thermophilic, 47.7-kb Geobacillus stearothermophilus bacteriophage TP-84 and its classification in the new Tp84virus genus.

Authors:  Piotr M Skowron; Andrew M Kropinski; Joanna Zebrowska; Lukasz Janus; Kasjan Szemiako; Edyta Czajkowska; Natalia Maciejewska; Malgorzata Skowron; Joanna Łoś; Marcin Łoś; Agnieszka Zylicz-Stachula
Journal:  PLoS One       Date:  2018-04-06       Impact factor: 3.240

4.  The Revisited Genome of Bacillus subtilis Bacteriophage SPP1.

Authors:  Lia M Godinho; Mehdi El Sadek Fadel; Céline Monniot; Lina Jakutyte; Isabelle Auzat; Audrey Labarde; Karima Djacem; Leonor Oliveira; Rut Carballido-Lopez; Silvia Ayora; Paulo Tavares
Journal:  Viruses       Date:  2018-12-11       Impact factor: 5.048

Review 5.  Viruses in Extreme Environments, Current Overview, and Biotechnological Potential.

Authors:  Jose F Gil; Victoria Mesa; Natalia Estrada-Ortiz; Mauricio Lopez-Obando; Andrés Gómez; Jersson Plácido
Journal:  Viruses       Date:  2021-01-08       Impact factor: 5.048

6.  Unveiling Ecological and Genetic Novelty within Lytic and Lysogenic Viral Communities of Hot Spring Phototrophic Microbial Mats.

Authors:  Sergio Guajardo-Leiva; Fernando Santos; Oscar Salgado; Christophe Regeard; Laurent Quillet; Beatriz Díez
Journal:  Microbiol Spectr       Date:  2021-11-17

7.  Some (bacilli) like it hot: genomics of Geobacillus species.

Authors:  David J Studholme
Journal:  Microb Biotechnol       Date:  2014-09-05       Impact factor: 5.813

  7 in total

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