Literature DB >> 24794701

SMC complexes link gene expression and genome architecture.

Jill M Dowen1, Richard A Young2.   

Abstract

The structural maintenance of chromosomes (SMC) complexes are associated with transcriptional enhancers, promoters and insulators, where they contribute to the control of gene expression and genome structure. We review here recent insights into the interlinked roles of SMC complexes in gene expression and genome architecture. Among these, we note evidence that SMC complexes play important roles in the regulation of genes that control cell identity. We conclude by reviewing diseases associated with SMC mutations.
Copyright © 2013 Elsevier Ltd. All rights reserved.

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Year:  2014        PMID： 24794701      PMCID： PMC4045092          DOI： 10.1016/j.gde.2013.11.009

Source DB:  PubMed          Journal:  Curr Opin Genet Dev        ISSN： 0959-437X            Impact factor:   5.578


  113 in total

1.  Cleavage of cohesin by the CD clan protease separin triggers anaphase in yeast.

Authors:  F Uhlmann; D Wernic; M A Poupart; E V Koonin; K Nasmyth
Journal:  Cell       Date:  2000-10-27       Impact factor: 41.582

Review 2.  Cornelia de Lange Syndrome and the link between chromosomal function, DNA repair and developmental gene regulation.

Authors:  Tom Strachan
Journal:  Curr Opin Genet Dev       Date:  2005-06       Impact factor: 5.578

Review 3.  C. elegans dosage compensation: a window into mechanisms of domain-scale gene regulation.

Authors:  Sevinc Ercan; Jason D Lieb
Journal:  Chromosome Res       Date:  2009       Impact factor: 5.239

4.  Effects of sister chromatid cohesion proteins on cut gene expression during wing development in Drosophila.

Authors:  Dale Dorsett; Joel C Eissenberg; Ziva Misulovin; Andrew Martens; Bethany Redding; Kim McKim
Journal:  Development       Date:  2005-10-05       Impact factor: 6.868

5.  The RNA Pol II elongation factor Ell3 marks enhancers in ES cells and primes future gene activation.

Authors:  Chengqi Lin; Alexander S Garruss; Zhuojuan Luo; Fengli Guo; Ali Shilatifard
Journal:  Cell       Date:  2012-12-27       Impact factor: 41.582

6.  Selective inhibition of tumor oncogenes by disruption of super-enhancers.

Authors:  Jakob Lovén; Heather A Hoke; Charles Y Lin; Ashley Lau; David A Orlando; Christopher R Vakoc; James E Bradner; Tong Ihn Lee; Richard A Young
Journal:  Cell       Date:  2013-04-11       Impact factor: 41.582

7.  Systematic reduction of cohesin differentially affects chromosome segregation, condensation, and DNA repair.

Authors:  Jill M Heidinger-Pauli; Ozlem Mert; Carol Davenport; Vincent Guacci; Douglas Koshland
Journal:  Curr Biol       Date:  2010-05-06       Impact factor: 10.834

8.  Cohesin relocation from sites of chromosomal loading to places of convergent transcription.

Authors:  Armelle Lengronne; Yuki Katou; Saori Mori; Shihori Yokobayashi; Gavin P Kelly; Takehiko Itoh; Yoshinori Watanabe; Katsuhiko Shirahige; Frank Uhlmann
Journal:  Nature       Date:  2004-06-30       Impact factor: 49.962

9.  NIPBL, encoding a homolog of fungal Scc2-type sister chromatid cohesion proteins and fly Nipped-B, is mutated in Cornelia de Lange syndrome.

Authors:  Emma T Tonkin; Tzu-Jou Wang; Steven Lisgo; Michael J Bamshad; Tom Strachan
Journal:  Nat Genet       Date:  2004-05-16       Impact factor: 38.330

10.  Condensin II promotes the formation of chromosome territories by inducing axial compaction of polyploid interphase chromosomes.

Authors:  Christopher R Bauer; Tom A Hartl; Giovanni Bosco
Journal:  PLoS Genet       Date:  2012-08-30       Impact factor: 5.917
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  10 in total

1.  Cohesin recruits the Esco1 acetyltransferase genome wide to repress transcription and promote cohesion in somatic cells.

Authors:  Sadia Rahman; Mathew J K Jones; Prasad V Jallepalli
Journal:  Proc Natl Acad Sci U S A       Date:  2015-08-24       Impact factor: 11.205

2.  Binding of an X-Specific Condensin Correlates with a Reduction in Active Histone Modifications at Gene Regulatory Elements.

Authors:  Lena Annika Street; Ana Karina Morao; Lara Heermans Winterkorn; Chen-Yu Jiao; Sarah Elizabeth Albritton; Mohammed Sadic; Maxwell Kramer; Sevinç Ercan
Journal:  Genetics       Date:  2019-05-22       Impact factor: 4.562

3.  Single-Molecule Imaging Reveals a Collapsed Conformational State for DNA-Bound Cohesin.

Authors:  Johannes Stigler; Gamze Ö Çamdere; Douglas E Koshland; Eric C Greene
Journal:  Cell Rep       Date:  2016-04-21       Impact factor: 9.423

4.  HiCPlotter integrates genomic data with interaction matrices.

Authors:  Kadir Caner Akdemir; Lynda Chin
Journal:  Genome Biol       Date:  2015-09-21       Impact factor: 13.583

Review 5.  Dynamics of double strand breaks and chromosomal translocations.

Authors:  Olga V Iarovaia; Mikhail Rubtsov; Elena Ioudinkova; Tatiana Tsfasman; Sergey V Razin; Yegor S Vassetzky
Journal:  Mol Cancer       Date:  2014-11-18       Impact factor: 27.401

6.  Temporospatial induction of homeodomain gene cut dictates natural lineage reprogramming.

Authors:  Ke Xu; Xiaodan Liu; Yuchun Wang; Chouin Wong; Yan Song
Journal:  Elife       Date:  2018-05-01       Impact factor: 8.140

7.  Condensin controls cellular RNA levels through the accurate segregation of chromosomes instead of directly regulating transcription.

Authors:  Clémence Hocquet; Xavier Robellet; Laurent Modolo; Xi-Ming Sun; Claire Burny; Sara Cuylen-Haering; Esther Toselli; Sandra Clauder-Münster; Lars Steinmetz; Christian H Haering; Samuel Marguerat; Pascal Bernard
Journal:  Elife       Date:  2018-09-19       Impact factor: 8.140

8.  Comparing and Contrasting the Effects of Drosophila Condensin II Subunit dCAP-D3 Overexpression and Depletion in Vivo.

Authors:  Emily Deutschman; Jacqueline R Ward; Kimberly T Ho-A-Lim; Tyler J Alban; Dongmei Zhang; Belinda Willard; Madeleine E Lemieux; Justin D Lathia; Michelle S Longworth
Journal:  Genetics       Date:  2018-08-01       Impact factor: 4.562

9.  Functional impact of cancer-associated cohesin variants on gene expression and cellular identity.

Authors:  Natalie L Rittenhouse; Zachary M Carico; Ying Frances Liu; Holden C Stefan; Nicole L Arruda; Junjie Zhou; Jill M Dowen
Journal:  Genetics       Date:  2021-04-15       Impact factor: 4.562

10.  CTCF-mediated chromatin looping provides a topological framework for the formation of phase-separated transcriptional condensates.

Authors:  Ryanggeun Lee; Moo-Koo Kang; Yong-Jin Kim; Bobae Yang; Hwanyong Shim; Sugyung Kim; Kyungwoo Kim; Chul Min Yang; Byeong-Gyu Min; Woong-Jae Jung; Eun-Chong Lee; Jung-Sik Joo; Gunhee Park; Won-Ki Cho; Hyoung-Pyo Kim
Journal:  Nucleic Acids Res       Date:  2022-01-11       Impact factor: 16.971
  10 in total

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