Literature DB >> 24794033

Structural and functional characterization of 4-hydroxyphenylpyruvate dioxygenase from the thermoacidophilic archaeon Picrophilus torridus.

Eduard Frick1, Thomas Spatzal, Stefan Gerhardt, Andreas Krämer, Oliver Einsle, Wolfgang Hüttel.   

Abstract

4-Hydroxyphenylpyruvate dioxygenase (Hpd, EC 1.13.11.27) catalyzes the conversion of 4-hydroxyphenylpyruvate into homogentisate in the second step of oxidative tyrosine catabolism. This pathway is known from bacteria and eukaryotes, but so far no archaeal Hpd has been described. Here, we report the biochemical characterization of an Hpd from the extremophilic archaeon Picrophilus torridus (Pt_Hpd), together with its three-dimensional structure at a resolution of 2.6 Å. Two pH optima were observed at 50 °C: pH 4.0 (close to native conditions) and pH 7.0. The enzyme showed only moderate thermostability and was inactivated with a half-life of ~1.5 h even under optimal reaction conditions. At the ideal physiological growth conditions of P. torridus, Pt_Hpd was inactive after 1 h, showing that the enzyme is protected in vivo from denaturation and/or is only partially adapted to the harsh environmental conditions in the cytosol of P. torridus. The influence of different additives on the activity was investigated. Pt_Hpd exhibited a turnover number k(cat) of 9.9 ± 0.6 s(-1) and a substrate binding affinity K(m) of 142 ± 23 µM. In addition, substrate inhibition with a binding affinity K(i) of 1.9 ± 0.3 mM was observed. Pt_Hpd is compared with isoenzymes from other species and the putative bacterial origin of the gene is discussed.

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Year:  2014        PMID: 24794033     DOI: 10.1007/s00792-014-0645-x

Source DB:  PubMed          Journal:  Extremophiles        ISSN: 1431-0651            Impact factor:   2.395


  35 in total

1.  Evidence for the mechanism of hydroxylation by 4-hydroxyphenylpyruvate dioxygenase and hydroxymandelate synthase from intermediate partitioning in active site variants.

Authors:  Dhara D Shah; John A Conrad; Brian Heinz; June M Brownlee; Graham R Moran
Journal:  Biochemistry       Date:  2011-08-16       Impact factor: 3.162

2.  Crystal structure of Pseudomonas fluorescens 4-hydroxyphenylpyruvate dioxygenase: an enzyme involved in the tyrosine degradation pathway.

Authors:  L Serre; A Sailland; D Sy; P Boudec; A Rolland; E Pebay-Peyroula; C Cohen-Addad
Journal:  Structure       Date:  1999-08-15       Impact factor: 5.006

3.  The crystal structures of Zea mays and Arabidopsis 4-hydroxyphenylpyruvate dioxygenase.

Authors:  Iris M Fritze; Lars Linden; Jörg Freigang; Günter Auerbach; Robert Huber; Stefan Steinbacher
Journal:  Plant Physiol       Date:  2004-04       Impact factor: 8.340

4.  Structure elucidation and preliminary assessment of hydrolase activity of PqsE, the Pseudomonas quinolone signal (PQS) response protein.

Authors:  Shen Yu; Vanessa Jensen; Janine Seeliger; Ingo Feldmann; Stefan Weber; Erik Schleicher; Susanne Häussler; Wulf Blankenfeldt
Journal:  Biochemistry       Date:  2009-11-03       Impact factor: 3.162

5.  Features and development of Coot.

Authors:  P Emsley; B Lohkamp; W G Scott; K Cowtan
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2010-03-24

6.  Picrophilus gen. nov., fam. nov.: a novel aerobic, heterotrophic, thermoacidophilic genus and family comprising archaea capable of growth around pH 0.

Authors:  C Schleper; G Puehler; I Holz; A Gambacorta; D Janekovic; U Santarius; H P Klenk; W Zillig
Journal:  J Bacteriol       Date:  1995-12       Impact factor: 3.490

7.  Extremely thermostable esterases from the thermoacidophilic euryarchaeon Picrophilus torridus.

Authors:  Matthias Hess; Moritz Katzer; Garabed Antranikian
Journal:  Extremophiles       Date:  2008-03-11       Impact factor: 2.395

8.  Efficient in vitro synthesis of cis-polyisoprenes using a thermostable cis-prenyltransferase from a hyperthermophilic archaeon Thermococcus kodakaraensis.

Authors:  Yosuke Yamada; Wakao Fukuda; Kazutake Hirooka; Takeshi Hiromoto; Jun-Ichi Nakayama; Tadayuki Imanaka; Ei-Ichiro Fukusaki; Shinsuke Fujiwara
Journal:  J Biotechnol       Date:  2009-07-05       Impact factor: 3.307

9.  Production of pyomelanin, a second type of melanin, via the tyrosine degradation pathway in Aspergillus fumigatus.

Authors:  Jeannette Schmaler-Ripcke; Venelina Sugareva; Peter Gebhardt; Robert Winkler; Olaf Kniemeyer; Thorsten Heinekamp; Axel A Brakhage
Journal:  Appl Environ Microbiol       Date:  2008-11-21       Impact factor: 4.792

10.  MUSCLE: a multiple sequence alignment method with reduced time and space complexity.

Authors:  Robert C Edgar
Journal:  BMC Bioinformatics       Date:  2004-08-19       Impact factor: 3.169

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  1 in total

1.  Characterization of group II chaperonins from an acidothermophilic archaeon Picrophilus torridus.

Authors:  Yohei Y Yamamoto; Kanako Tsuchida; Keiichi Noguchi; Naoki Ogawa; Hiroshi Sekiguchi; Yuji C Sasaki; Masafumi Yohda
Journal:  FEBS Open Bio       Date:  2016-06-14       Impact factor: 2.693

  1 in total

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