Literature DB >> 24793533

The topology of robustness and evolvability in evolutionary systems with genotype-phenotype map.

Esther Ibáñez-Marcelo1, Tomás Alarcón2.   

Abstract

In this paper we formulate a topological definition of the concepts of robustness and evolvability. We start our investigation by formulating a multiscale model of the evolutionary dynamics of a population of cells. Our cells are characterised by a genotype-phenotype map: their chances of survival under selective pressure are determined by their phenotypes, whereas the latter are determined their genotypes. According to our multiscale dynamics, the population dynamics generates the evolution of a genotype-phenotype network. Our representation of the genotype-phenotype network is similar to previously described ones, but has a novel element, namely, our network contains two types of nodes: genotype and phenotype nodes. This network representation allows us to characterise robustness and evolvability in terms of its topological properties: phenotypic robustness by means of the clustering coefficient of the phenotype nodes, and evolvability as the emergence of giant connected component which allows navigation between phenotypes. This topological definition of evolvability allows us to characterise the so-called robustness of evolvability, which is defined in terms of the robustness against attack (i.e. edge removal) of the giant connected component. An investigation of the factors that affect the robustness of evolvability shows that phenotypic robustness and the cryptic genetic variation are key to the integrity of the ability to innovate. These results fit within the framework of a number of models which point out that robustness favours rather than hindering evolvability. We further show that the corresponding phenotype network, defined as the one-component projection of the whole genotype-phenotype network, exhibits the small-world phenomenon, which implies that in this type of evolutionary system the rate of adaptability is enhanced.
Copyright © 2014 Elsevier Ltd. All rights reserved.

Entities:  

Keywords:  Complex networks; Genetic Regulatory Networks (GRN); Modeling; Percolation

Mesh:

Year:  2014        PMID: 24793533     DOI: 10.1016/j.jtbi.2014.04.014

Source DB:  PubMed          Journal:  J Theor Biol        ISSN: 0022-5193            Impact factor:   2.691


  5 in total

1.  Surviving evolutionary escape on complex genotype-phenotype networks.

Authors:  Esther Ibáñez-Marcelo; Tomás Alarcón
Journal:  J Math Biol       Date:  2015-05-23       Impact factor: 2.259

Review 2.  Structural properties of genotype-phenotype maps.

Authors:  S E Ahnert
Journal:  J R Soc Interface       Date:  2017-07       Impact factor: 4.118

Review 3.  On the networked architecture of genotype spaces and its critical effects on molecular evolution.

Authors:  Jacobo Aguirre; Pablo Catalán; José A Cuesta; Susanna Manrubia
Journal:  Open Biol       Date:  2018-07       Impact factor: 6.411

4.  Genomic Variation, Evolvability, and the Paradox of Mental Illness.

Authors:  Camillo Thomas Gualtieri
Journal:  Front Psychiatry       Date:  2021-01-21       Impact factor: 4.157

5.  Evolution of correlated complexity in the radically different courtship signals of birds-of-paradise.

Authors:  Russell A Ligon; Christopher D Diaz; Janelle L Morano; Jolyon Troscianko; Martin Stevens; Annalyse Moskeland; Timothy G Laman; Edwin Scholes
Journal:  PLoS Biol       Date:  2018-11-20       Impact factor: 8.029

  5 in total

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