Literature DB >> 24789374

Microfluidics for single-cell genetic analysis.

A M Thompson1, A L Paguirigan, J E Kreutz, J P Radich, D T Chiu.   

Abstract

The ability to correlate single-cell genetic information to cellular phenotypes will provide the kind of detailed insight into human physiology and disease pathways that is not possible to infer from bulk cell analysis. Microfluidic technologies are attractive for single-cell manipulation due to precise handling and low risk of contamination. Additionally, microfluidic single-cell techniques can allow for high-throughput and detailed genetic analyses that increase accuracy and decrease reagent cost compared to bulk techniques. Incorporating these microfluidic platforms into research and clinical laboratory workflows can fill an unmet need in biology, delivering the highly accurate, highly informative data necessary to develop new therapies and monitor patient outcomes. In this perspective, we describe the current and potential future uses of microfluidics at all stages of single-cell genetic analysis, including cell enrichment and capture, single-cell compartmentalization and manipulation, and detection and analyses.

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Mesh:

Year:  2014        PMID: 24789374      PMCID: PMC4117719          DOI: 10.1039/c4lc00175c

Source DB:  PubMed          Journal:  Lab Chip        ISSN: 1473-0189            Impact factor:   6.799


  35 in total

1.  Selective encapsulation of single cells and subcellular organelles into picoliter- and femtoliter-volume droplets.

Authors:  Mingyan He; J Scott Edgar; Gavin D M Jeffries; Robert M Lorenz; J Patrick Shelby; Daniel T Chiu
Journal:  Anal Chem       Date:  2005-03-15       Impact factor: 6.986

2.  High-efficiency single-cell entrapment and fluorescence in situ hybridization analysis using a poly(dimethylsiloxane) microfluidic device integrated with a black poly(ethylene terephthalate) micromesh.

Authors:  Tadashi Matsunaga; Masahito Hosokawa; Atsushi Arakaki; Tomoyuki Taguchi; Tetsushi Mori; Tsuyoshi Tanaka; Haruko Takeyama
Journal:  Anal Chem       Date:  2008-06-07       Impact factor: 6.986

3.  Smart-seq2 for sensitive full-length transcriptome profiling in single cells.

Authors:  Simone Picelli; Åsa K Björklund; Omid R Faridani; Sven Sagasser; Gösta Winberg; Rickard Sandberg
Journal:  Nat Methods       Date:  2013-09-22       Impact factor: 28.547

4.  Clonal evolution of preleukemic hematopoietic stem cells precedes human acute myeloid leukemia.

Authors:  Max Jan; Thomas M Snyder; M Ryan Corces-Zimmerman; Paresh Vyas; Irving L Weissman; Stephen R Quake; Ravindra Majeti
Journal:  Sci Transl Med       Date:  2012-08-29       Impact factor: 17.956

5.  Self-digitization of samples into a high-density microfluidic bottom-well array.

Authors:  Thomas Schneider; Gloria S Yen; Alison M Thompson; Daniel R Burnham; Daniel T Chiu
Journal:  Anal Chem       Date:  2013-10-07       Impact factor: 6.986

Review 6.  Recent advances in microfluidic cell separations.

Authors:  Yan Gao; Wenjie Li; Dimitri Pappas
Journal:  Analyst       Date:  2013-06-19       Impact factor: 4.616

7.  Inertial focusing for tumor antigen-dependent and -independent sorting of rare circulating tumor cells.

Authors:  Emre Ozkumur; Ajay M Shah; Jordan C Ciciliano; Benjamin L Emmink; David T Miyamoto; Elena Brachtel; Min Yu; Pin-i Chen; Bailey Morgan; Julie Trautwein; Anya Kimura; Sudarshana Sengupta; Shannon L Stott; Nezihi Murat Karabacak; Thomas A Barber; John R Walsh; Kyle Smith; Philipp S Spuhler; James P Sullivan; Richard J Lee; David T Ting; Xi Luo; Alice T Shaw; Aditya Bardia; Lecia V Sequist; David N Louis; Shyamala Maheswaran; Ravi Kapur; Daniel A Haber; Mehmet Toner
Journal:  Sci Transl Med       Date:  2013-04-03       Impact factor: 17.956

Review 8.  Probing cell-cell communication with microfluidic devices.

Authors:  Feng Guo; Jarrod B French; Peng Li; Hong Zhao; Chung Yu Chan; James R Fick; Stephen J Benkovic; Tony Jun Huang
Journal:  Lab Chip       Date:  2013-07-10       Impact factor: 6.799

9.  Single-cell gene expression analysis reveals genetic associations masked in whole-tissue experiments.

Authors:  Quin F Wills; Kenneth J Livak; Alex J Tipping; Tariq Enver; Andrew J Goldson; Darren W Sexton; Chris Holmes
Journal:  Nat Biotechnol       Date:  2013-07-21       Impact factor: 54.908

10.  Data exploration, quality control and testing in single-cell qPCR-based gene expression experiments.

Authors:  Andrew McDavid; Greg Finak; Pratip K Chattopadyay; Maria Dominguez; Laurie Lamoreaux; Steven S Ma; Mario Roederer; Raphael Gottardo
Journal:  Bioinformatics       Date:  2012-12-24       Impact factor: 6.937

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  22 in total

1.  Two-dimensional arrays of cell-laden polymer hydrogel modules.

Authors:  Yihe Wang; Yunfeng Li; Héloïse Thérien-Aubin; Jennifer Ma; Peter W Zandstra; Eugenia Kumacheva
Journal:  Biomicrofluidics       Date:  2016-01-21       Impact factor: 2.800

Review 2.  Single-cell patterning technology for biological applications.

Authors:  Zihui Wang; Baihe Lang; Yingmin Qu; Li Li; Zhengxun Song; Zuobin Wang
Journal:  Biomicrofluidics       Date:  2019-11-11       Impact factor: 2.800

3.  Single-cell isolation by a modular single-cell pipette for RNA-sequencing.

Authors:  Kai Zhang; Min Gao; Zechen Chong; Ying Li; Xin Han; Rui Chen; Lidong Qin
Journal:  Lab Chip       Date:  2016-11-29       Impact factor: 6.799

Review 4.  Microfluidics in systems biology-hype or truly useful?

Authors:  Yi Liu; Hang Lu
Journal:  Curr Opin Biotechnol       Date:  2016-06       Impact factor: 9.740

Review 5.  Microfluidic Sample Preparation for Single Cell Analysis.

Authors:  Sanjin Hosic; Shashi K Murthy; Abigail N Koppes
Journal:  Anal Chem       Date:  2015-12-03       Impact factor: 6.986

Review 6.  Translating microfluidics: Cell separation technologies and their barriers to commercialization.

Authors:  C Wyatt Shields; Korine A Ohiri; Luisa M Szott; Gabriel P López
Journal:  Cytometry B Clin Cytom       Date:  2016-07-05       Impact factor: 3.058

Review 7.  Microfluidic devices to enrich and isolate circulating tumor cells.

Authors:  J H Myung; S Hong
Journal:  Lab Chip       Date:  2015-11-09       Impact factor: 6.799

Review 8.  Review of Microfluidic Methods for Cellular Lysis.

Authors:  Emil Grigorov; Boris Kirov; Marin B Marinov; Vassil Galabov
Journal:  Micromachines (Basel)       Date:  2021-04-28       Impact factor: 2.891

Review 9.  Enhanced single-cell encapsulation in microfluidic devices: From droplet generation to single-cell analysis.

Authors:  Si Da Ling; Yuhao Geng; An Chen; Yanan Du; Jianhong Xu
Journal:  Biomicrofluidics       Date:  2020-12-22       Impact factor: 2.800

10.  An acoustofluidic trap and transfer approach for organizing a high density single cell array.

Authors:  Korine A Ohiri; Sean T Kelly; Jeffrey D Motschman; Kevin H Lin; Kris C Wood; Benjamin B Yellen
Journal:  Lab Chip       Date:  2018-07-10       Impact factor: 7.517

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