Literature DB >> 24788410

The uncommon roles of common gene regulatory factors in the genomes of differentiating cells.

Eric H Davidson1.   

Abstract

Viewed through the lens of comparative regulatory mechanisms in developmental processes, the article of Calero-Nieto et al (2014, this issue) is of particular interest. This work uncovers the causal combinatorial subtleties of the distinct enhancer occupancy profiles displayed by ten different transcription factors, which are expressed in common in two hematopoietic cell types, a stem cell-like precursor and primary mast cells.

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Year:  2014        PMID: 24788410      PMCID: PMC4198022          DOI: 10.1002/embj.201488693

Source DB:  PubMed          Journal:  EMBO J        ISSN: 0261-4189            Impact factor:   11.598


  8 in total

1.  A transcription factor collective defines cardiac cell fate and reflects lineage history.

Authors:  Guillaume Junion; Mikhail Spivakov; Charles Girardot; Martina Braun; E Hilary Gustafson; Ewan Birney; Eileen E M Furlong
Journal:  Cell       Date:  2012-02-03       Impact factor: 41.582

2.  Co-occupancy by multiple cardiac transcription factors identifies transcriptional enhancers active in heart.

Authors:  Aibin He; Sek Won Kong; Qing Ma; William T Pu
Journal:  Proc Natl Acad Sci U S A       Date:  2011-03-17       Impact factor: 11.205

3.  Multipotent hematopoietic progenitor cells immortalized by Lhx2 self-renew by a cell nonautonomous mechanism.

Authors:  P Pinto do O; E Wandzioch; A Kolterud; L Carlsson
Journal:  Exp Hematol       Date:  2001-08       Impact factor: 3.084

4.  Simple combinations of lineage-determining transcription factors prime cis-regulatory elements required for macrophage and B cell identities.

Authors:  Sven Heinz; Christopher Benner; Nathanael Spann; Eric Bertolino; Yin C Lin; Peter Laslo; Jason X Cheng; Cornelis Murre; Harinder Singh; Christopher K Glass
Journal:  Mol Cell       Date:  2010-05-28       Impact factor: 17.970

Review 5.  Pioneer transcription factors: establishing competence for gene expression.

Authors:  Kenneth S Zaret; Jason S Carroll
Journal:  Genes Dev       Date:  2011-11-01       Impact factor: 11.361

6.  Combinatorial transcriptional control in blood stem/progenitor cells: genome-wide analysis of ten major transcriptional regulators.

Authors:  Nicola K Wilson; Samuel D Foster; Xiaonan Wang; Kathy Knezevic; Judith Schütte; Polynikis Kaimakis; Paulina M Chilarska; Sarah Kinston; Willem H Ouwehand; Elaine Dzierzak; John E Pimanda; Marella F T R de Bruijn; Berthold Göttgens
Journal:  Cell Stem Cell       Date:  2010-10-08       Impact factor: 24.633

7.  Key regulators control distinct transcriptional programmes in blood progenitor and mast cells.

Authors:  Fernando J Calero-Nieto; Felicia S Ng; Nicola K Wilson; Rebecca Hannah; Victoria Moignard; Ana I Leal-Cervantes; Isabel Jimenez-Madrid; Evangelia Diamanti; Lorenz Wernisch; Berthold Göttgens
Journal:  EMBO J       Date:  2014-04-23       Impact factor: 11.598

8.  Genome-wide screens for in vivo Tinman binding sites identify cardiac enhancers with diverse functional architectures.

Authors:  Hong Jin; Robert Stojnic; Boris Adryan; Anil Ozdemir; Angelike Stathopoulos; Manfred Frasch
Journal:  PLoS Genet       Date:  2013-01-10       Impact factor: 5.917

  8 in total
  3 in total

Review 1.  The ubiquitous transcription factor CTCF promotes lineage-specific epigenomic remodeling and establishment of transcriptional networks driving cell differentiation.

Authors:  Julie Dubois-Chevalier; Bart Staels; Philippe Lefebvre; Jérôme Eeckhoute
Journal:  Nucleus       Date:  2015       Impact factor: 4.197

2.  The Comet Cometh: Evolving Developmental Systems.

Authors:  Johannes Jaeger; Manfred Laubichler; Werner Callebaut
Journal:  Biol Theory       Date:  2015-02-17

3.  Extended evolution: A conceptual framework for integrating regulatory networks and niche construction.

Authors:  Manfred D Laubichler; Jürgen Renn
Journal:  J Exp Zool B Mol Dev Evol       Date:  2015-06-11       Impact factor: 2.656

  3 in total

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