| Literature DB >> 24787949 |
Xu Wang1, Ji-Fan Hu1, Yehui Tan2, Jiuwei Cui2, Guanjun Wang2, Randall J Mrsny3, Wei Li2.
Abstract
Gene single nucleotide polymorphisms (SNPs) have been extensively studied in association with development and prognosis of various malignancies. However, the potential role of genetic polymorphisms of cancer stem cell (CSC) marker genes with respect to cancer risk has not been examined. We conducted a case-control study involving a total of 1000 subjects (500 lung cancer patients and 500 age-matched cancer-free controls) from northeastern China. Lung cancer risk was analyzed in a logistic regression model in association with genotypes of four lung CSC marker genes (CD133, ALDH1, Musashi-1, and EpCAM). Using univariate analysis, the Musashi-1 rs2522137 GG genotype was found to be associated with a higher incidence of lung cancer compared with the TT genotype. No significant associations were observed for gene variants of CD133, ALDH1, or EpCAM. In multivariate analysis, Musashi-1 rs2522137 was still significantly associated with lung cancer when environmental and lifestyle factors were incorporated in the model, including lower BMI; family history of cancer; prior diagnosis of chronic obstructive pulmonary disease, pneumonia, or pulmonary tuberculosis; occupational exposure to pesticide; occupational exposure to gasoline or diesel fuel; heavier smoking; and exposure to heavy cooking emissions. The value of the area under the receiver-operating characteristic (ROC) curve (AUC) was 0.7686. To our knowledge, this is the first report to show an association between a Musashi-1 genotype and lung cancer risk. Further, the prediction model in this study may be useful in determining individuals with high risk of lung cancer.Entities:
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Year: 2014 PMID: 24787949 PMCID: PMC4008537 DOI: 10.1371/journal.pone.0095915
Source DB: PubMed Journal: PLoS One ISSN: 1932-6203 Impact factor: 3.240
Distribution of CSC marker genotypes and characteristics of the case group and the healthy control group.
| Characteristic | Case group | Control group | |
| (n = 500) | (n = 500 ) | ||
| rs2286455 | AA | 46 (9.2%) | 37 (7.4%) |
| GG | 266 (53.2%) | 262 (52.4%) | |
| GA | 188 (37.6%) | 201 (40.2%) | |
| rs1342024 | GG | 97 (19.4%) | 92 (18.4%) |
| CC | 164 (32.8%) | 166 (33.2%) | |
| GC | 239 (47.8%) | 242 (48.4%) | |
| rs13959 | TT | 89 (17.8%) | 99 (19.8%) |
| CC | 176 (35.2%) | 159 (31.8%) | |
| CT | 235 (47.0%) | 242 (48.4%) | |
| rs2522137 | TT | 219 (43.8%) | 219 (43.8%) |
| GG | 67 (13.4%) | 39 (7.8%) | |
| GT | 214 (42.8%) | 242 (48.4%) | |
| rs17036526 | GG | 224 (44.8%) | 233 (46.6%) |
| CC | 55 (11.0%) | 65 (13.0%) | |
| CG | 221 (44.2%) | 202 (40.4%) | |
| Gender | male | 305 (61%) | 302 (60.4%) |
| female | 195 (39%) | 198 (39.6%) | |
| Age | <30 | 2 (0.4%) | 5 (1.0%) |
| 30–39 | 14 (2.8%) | 16 (3.2%) | |
| 40–49 | 64 (12.8%) | 70 (14.0%) | |
| 50–59 | 176 (35.2%) | 196 (39.2%) | |
| 60–69 | 174 (34.8%) | 148 (19.7%) | |
| ≥70 | 70 (14.0%) | 65 (13.0%) | |
| Education | Junior high school and lower | 318 (63.6%) | 130 (26.0%) |
| High school | 97 (19.4%) | 144 (28.8%) | |
| Greater than high school | 85 (17.0%) | 226 (45.2%) | |
| Smoking | Pack years | 14.25 (0–36.0) | 0.0 (0.0–6.9) |
| exposure to | Absent | 398 (79.6%) | 473 (94.6%) |
| Pesticide | Present | 102 (20.4%) | 27 (5.4%) |
| exposure to | Absent | 487 (97.4%) | 496 (99.2%) |
| Gasoline/diesel | Present | 13 (2.6%) | 4 (0.8%) |
| exposure to Ink | Absent | 493 (98.6%) | 497 (99.4%) |
| Present | 7 (1.4%) | 3 (0.6%) | |
| Cooking emissions | Absent | 244 (48.8%) | 250 (50.0%) |
| (Total dish-years) | ≤50 | 149 (29.8%)) | 152 (30.4%) |
| 51–100 | 61 (12.2%) | 80 (16.0%) | |
| 101–150 | 46 (9.2%) | 18 (3.6%) | |
| Pneumonia | History Absent | 477 (95.4%) | 490 (98.0%) |
| History Present | 23 (4.6%) | 10 (2.0%) | |
| COPD | History Absent | 449 (89.8%) | 489 (97.8%) |
| History Present | 51 (10.2%) | 11 (2.2%) | |
| Pulmonary | History Absent | 470 (94.0%) | 486 (97.2%) |
| tuberculosis | History Present | 30 (6.0%) | 14 (2.8%) |
| Bronchial asthma | History Absent | 488 (97.6%) | 495 (99.0%) |
| History Present | 12 (2.4%) | 5 (1.0%) | |
| Family history | History Absent | 330 (66.0%) | 397 (79.4%) |
| of cancer | History Present | 170 (34.0%) | 103 (20.6%) |
| BMI | <18.5 | 49 (9.8%) | 15 (3.0%) |
| (kg/m2) | 18.5–24 | 302 (60.4%) | 230 (46.0%) |
| ≥24 | 149 (29.8%) | 255 (51.0%) | |
Association of SNPs with lung cancer risk in univariate analysis.
| Genotype | Univariate OR (95%CI) | P value | |
| rs17036526 | |||
| Recessive model | CC + GC | 1 | 0.568 |
| GG | 0.930 (0.725–1.193) | ||
| Dominant model | CC | 1 | 0.331 |
| GG + GC | 1.209 (0.825–1.773) | ||
| Additive model | CC | 1 | |
| GC | 1.293 (0.861–1.942) | 0.216 | |
| GG | 1.136 (0.759–1.700) | 0.535 | |
| Multiplicative model | G allele | 1.004 (0.837–1.205) | 0.963 |
| rs2522137 | |||
| Dominant model | TT | 1 | 1.000 |
| GG + TG | 1.000 (0.779–1.284) | ||
| Recessive model | TT + TG | 1 | 0.004 |
| GG | 1.829 (1.207–2.733) | ||
| Additive model | TT | 1 | |
| TG | 0.884 (0.680–1.150) | 0.359 | |
| GG | 1.718 (1.110–2.6591) | 0.015 | |
| Multiplicativemodel | G allele | 1.138 (0.942–1.374) | 0.179 |
| rs2286455 | |||
| Recessive model | GG + GA | 1 | 0.303 |
| AA | 1.268 (0.807–1.992) | ||
| Dominant model | GG | 1 | 0.800 |
| AA + GA | 0.968 (0.755–1.241) | ||
| Additive model | GG | 1 | |
| GA | 0.921 (0.709–1.197) | 0.540 | |
| AA | 1.225 (0.769–1.950) | 0.393 | |
| Multiplicative model | A allele | 0.963 (0.803–1.153) | 0.806 |
| rs1342024 | |||
| Recessive model | CC + CG | 1 | 0.686 |
| GG | 1.067 (0.778–1.465) | ||
| Dominant model | CC | 1 | 0.893 |
| GG + CG | 1.018 (0.782–1.325) | ||
| Additive model | CC | 1 | |
| CG | 1.000 (0.755–1.323) | 0.998 | |
| GG | 1.067 (0.746–1.526) | 0.722 | |
| Multiplicative model | G allele | 1.028 (0.863–1.226) | 0.754 |
| rs13959 | |||
| Recessive model | TT + TC | 1 | 0.255 |
| CC | 1.165 (0.896–1.515) | ||
| Dominant model | TT | 1 | 0.418 |
| CC + TC | 1.140 (0.830–1.566) | ||
| Additive model | TT | 1 | |
| TC | 1.080 (0.770–1.514) | 0.655 | |
| CC | 1.231 (0.861–1.761) | 0.254 | |
| Multiplicative model | C allele | 1.114 (0.935–1.327) | 0.228 |
Figure 1ROC plots for lung cancer risk prediction model.
The ROC AUC was 0.7686. The straight line represented the ROC curve expected by chance alone.
Association of SNPs with gender and age from lung cancer patients.
| Characteristic | Gender |
| Age (yrs.) |
| ||
| M | F | |||||
| rs2286455 | AA | 29 | 17 | 0.184 | 58.87±10.18 | reference |
| GG | 171 | 95 | 57.07±11.34 | 0.257 | ||
| GA | 105 | 83 | 59.02±9.22 | 0.872 | ||
| rs1342024 | CC | 99 | 65 | 0.806 | 58.85±9.95 | reference |
| GG | 62 | 35 | 59.86±9.95 | 0.432 | ||
| GC | 144 | 95 | 58.25±9.93 | 0.550 | ||
| rs13959 | CC | 103 | 73 | 0.574 | 59.36±9.78 | reference |
| TT | 58 | 31 | 60.15±9.84 | 0.541 | ||
| CT | 144 | 91 | 57.79±10.03 | 0.112 | ||
| rs2522137 | GG | 39 | 28 | 0.877 | 58.27±10.52 | reference |
| TT | 135 | 84 | 58.07±10.15 | 0.885 | ||
| GT | 131 | 83 | 59.62±9.50 | 0.331 | ||
| rs17036526 | CC | 31 | 24 | 0.740 | 59.80±9.90 | reference |
| GG | 139 | 85 | 58.90±9.08 | 0.547 | ||
| CG | 135 | 86 | 58.36±10.76 | 0.338 | ||
*M, male; F, female.
Association of SNPs with histology types from lung cancer patients.
| Characteristic | Histology types |
| ||||
| SQ | AD | SC | OC | |||
| rs2286455 | AA | 78 | 93 | 70 | 25 | 0.048 |
| GG | 10 | 16 | 18 | 2 | ||
| GA | 53 | 67 | 38 | 30 | ||
| rs1342024 | CC | 41 | 59 | 43 | 21 | 0.640 |
| GG | 30 | 39 | 20 | 8 | ||
| GC | 70 | 78 | 63 | 28 | ||
| rs13959 | CC | 49 | 64 | 42 | 21 | 0.324 |
| TT | 23 | 39 | 22 | 5 | ||
| CT | 69 | 73 | 62 | 31 | ||
| rs2522137 | GG | 21 | 25 | 18 | 3 | 0.361 |
| TT | 65 | 69 | 59 | 26 | ||
| GT | 55 | 82 | 49 | 28 | ||
| rs17036526 | CC | 15 | 19 | 13 | 8 | 0.780 |
| GG | 70 | 76 | 52 | 26 | ||
| CG | 56 | 81 | 61 | 23 | ||
* SQ: squamous cell; AD, adenocarcinoma; SC, small cell; OC, other carcinomas.
Table 1. Single nucleotide polymorphisms in cancer stem cell marker genes.
| Gene | SNP | Base exchange | Gene location | Reference |
| CD133 | rs2286455 | G>A | Splice Site | nd |
| ALDH1A1 | rs1342024 | G>C | Upstream |
|
| rs13959 | C>T | Synonymous coding | nd | |
| MSI-1 | rs2522137 | T>G | 3′ UTR | nd |
| EpCAM | rs17036526 | G>C | Splice site | nd |
UTR: untranslated region; nd: no data.
Table 4. Multivariate risk model with adjusted odds ratios and 95% confidence intervals.
| Risk factors | Exp (B) | 95% C.I. | P value |
| Occupational exposure to pesticide | |||
| Absence | 1.00 | Reference | 0.000 |
| Presence | 3.390 | (2.093–5.493) | |
| exposure to gasoline/diesel: | |||
| Absence | 1.00 | Reference | 0.012 |
| Presence | 4.653 | (1.402–15.448) | |
| Smoking | 1.032 | (1.024–1.041) | 0.000 |
| Cooking emission(Total dish-years) | 0.001 | ||
| ≤50 | 1.00 | Reference | |
| 51–100 | 1.304 | (0.934–1.819) | 0.119 |
| 101–150 | 0.941 | (0.608–1.457) | 0.785 |
| >150 | 3.375 | (1.779–6.402) | 0.000 |
| COPD: | |||
| History absence | 1.00 | Reference | 0.000 |
| History presence | 3.775 | (1.809–7.878) | |
| Pneumonia: | |||
| History presence | 1.00 | Reference | 0.021 |
| History absence | 0.369 | (0.158–0.860) | |
| Pulmonary tuberculosis: | |||
| History presence | 1.00 | Reference | 0.022 |
| History absence | 0.428 | (0.207–0.884) | |
| Family history of cancer: | |||
| History absence | 1.00 | Reference | 0.000 |
| History presence | 1.848 | (1.338–2.553) | |
| BMI(kg/m2): | 0.000 | ||
| <18.5 | 1.00 | Reference | |
| 18.5–24 | 0.370 | (0. 192–0. 714) | 0.003 |
| ≥24 | 0.168 | (0.086–0. 328) | 0.000 |
| rs2522137: | |||
| TT+TG | 1.00 | Reference | |
| GG | 1.926 | (1.209–3.070) | 0.006 |
COPD: chronic obstructive pulmonary disease