Literature DB >> 24786306

Fourier transform infrared detection of a polarizable proton trapped between photooxidized tyrosine YZ and a coupled histidine in photosystem II: relevance to the proton transfer mechanism of water oxidation.

Shin Nakamura1, Ryo Nagao, Ryouta Takahashi, Takumi Noguchi.   

Abstract

The redox-active tyrosine YZ (D1-Tyr161) in photosystem II (PSII) functions as an immediate electron acceptor of the Mn4Ca cluster, which is the catalytic center of photosynthetic water oxidation. YZ is also located in the hydrogen bond network that connects the Mn4Ca cluster to the lumen and hence is possibly related to the proton transfer process during water oxidation. To understand the role of YZ in the water oxidation mechanism, we have studied the hydrogen bonding interactions of YZ and its photooxidized neutral radical YZ(•) together with the interaction of the coupled His residue, D1-His190, using light-induced Fourier transform infrared (FTIR) difference spectroscopy. The YZ(•)-minus-YZ FTIR difference spectrum of Mn-depleted PSII core complexes exhibited a broad positive feature around 2800 cm(-1), which was absent in the corresponding spectrum of another redox-active tyrosine YD (D2-Tyr160). Analyses by (15)N and H/D substitutions, examination of the pH dependence, and density functional theory and quantum mechanics/molecular mechanics (QM/MM) calculations showed that this band arises from the N-H stretching vibration of the protonated cation of D1-His190 forming a charge-assisted strong hydrogen bond with YZ(•). This result provides strong evidence that the proton released from YZ upon its oxidation is trapped in D1-His190 and a positive charge remains on this His. The broad feature of the ~2800 cm(-1) band reflects a large proton polarizability in the hydrogen bond between YZ(•) and HisH(+). QM/MM calculations further showed that upon YZ oxidation the hydrogen bond network is rearranged and one water molecule moves toward D1-His190. From these data, a novel proton transfer mechanism via YZ(•)-HisH(+) is proposed, in which hopping of the polarizable proton of HisH(+) to this water triggers the transfer of the proton from substrate water to the luminal side. This proton transfer mechanism could be functional in the S2 → S3 transition, which requires proton release before electron transfer because of an excess positive charge on the Mn4Ca cluster.

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Year:  2014        PMID: 24786306     DOI: 10.1021/bi500237y

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  7 in total

1.  Redox potential of the terminal quinone electron acceptor QB in photosystem II reveals the mechanism of electron transfer regulation.

Authors:  Yuki Kato; Ryo Nagao; Takumi Noguchi
Journal:  Proc Natl Acad Sci U S A       Date:  2015-12-29       Impact factor: 11.205

2.  Proton Matrix ENDOR Studies on Ca2+-depleted and Sr2+-substituted Manganese Cluster in Photosystem II.

Authors:  Hiroki Nagashima; Yoshiki Nakajima; Jian-Ren Shen; Hiroyuki Mino
Journal:  J Biol Chem       Date:  2015-10-05       Impact factor: 5.157

3.  D1-Asn-298 in photosystem II is involved in a hydrogen-bond network near the redox-active tyrosine YZ for proton exit during water oxidation.

Authors:  Ryo Nagao; Hanayo Ueoka-Nakanishi; Takumi Noguchi
Journal:  J Biol Chem       Date:  2017-10-18       Impact factor: 5.157

4.  Genetically introduced hydrogen bond interactions reveal an asymmetric charge distribution on the radical cation of the special-pair chlorophyll P680.

Authors:  Ryo Nagao; Motoki Yamaguchi; Shin Nakamura; Hanayo Ueoka-Nakanishi; Takumi Noguchi
Journal:  J Biol Chem       Date:  2017-03-16       Impact factor: 5.157

Review 5.  Binding and functions of the two chloride ions in the oxygen-evolving center of photosystem II.

Authors:  Ko Imaizumi; Kentaro Ifuku
Journal:  Photosynth Res       Date:  2022-06-13       Impact factor: 3.429

6.  Proton Translocation via Tautomerization of Asn298 During the S2-S3 State Transition in the Oxygen-Evolving Complex of Photosystem II.

Authors:  Maria Chrysina; Juliana Cecília de Mendonça Silva; Georgia Zahariou; Dimitrios A Pantazis; Nikolaos Ioannidis
Journal:  J Phys Chem B       Date:  2019-03-29       Impact factor: 2.991

7.  Structural dynamics in the water and proton channels of photosystem II during the S2 to S3 transition.

Authors:  Rana Hussein; Mohamed Ibrahim; Asmit Bhowmick; Philipp S Simon; Ruchira Chatterjee; Louise Lassalle; Margaret Doyle; Isabel Bogacz; In-Sik Kim; Mun Hon Cheah; Sheraz Gul; Casper de Lichtenberg; Petko Chernev; Cindy C Pham; Iris D Young; Sergio Carbajo; Franklin D Fuller; Roberto Alonso-Mori; Alex Batyuk; Kyle D Sutherlin; Aaron S Brewster; Robert Bolotovsky; Derek Mendez; James M Holton; Nigel W Moriarty; Paul D Adams; Uwe Bergmann; Nicholas K Sauter; Holger Dobbek; Johannes Messinger; Athina Zouni; Jan Kern; Vittal K Yachandra; Junko Yano
Journal:  Nat Commun       Date:  2021-11-11       Impact factor: 14.919

  7 in total

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