Literature DB >> 24784252

Assessing the accuracy of the isotropic periodic sum method through Madelung energy computation.

Pedro Ojeda-May1, Jingzhi Pu1.   

Abstract

We tested the isotropic periodic sum (IPS) method for computing Madelung energies of ionic crystals. The performance of the method, both in its nonpolar (IPSn) and polar (IPSp) forms, was compared with that of the zero-charge and Wolf potentials [D. Wolf, P. Keblinski, S. R. Phillpot, and J. Eggebrecht, J. Chem. Phys. 110, 8254 (1999)]. The results show that the IPSn and IPSp methods converge the Madelung energy to its reference value with an average deviation of ∼10(-4) and ∼10(-7) energy units, respectively, for a cutoff range of 18-24a (a/2 being the nearest-neighbor ion separation). However, minor oscillations were detected for the IPS methods when deviations of the computed Madelung energies were plotted on a logarithmic scale as a function of the cutoff distance. To remove such oscillations, we introduced a modified IPSn potential in which both the local-region and long-range electrostatic terms are damped, in analogy to the Wolf potential. With the damped-IPSn potential, a smoother convergence was achieved. In addition, we observed a better agreement between the damped-IPSn and IPSp methods, which suggests that damping the IPSn potential is in effect similar to adding a screening potential in IPSp.

Entities:  

Year:  2014        PMID: 24784252     DOI: 10.1063/1.4871871

Source DB:  PubMed          Journal:  J Chem Phys        ISSN: 0021-9606            Impact factor:   3.488


  7 in total

1.  The homogeneity condition: A simple way to derive isotropic periodic sum potentials for efficient calculation of long-range interactions in molecular simulation.

Authors:  Xiongwu Wu; Bernard R Brooks
Journal:  J Chem Phys       Date:  2019-06-07       Impact factor: 3.488

2.  Isotropic periodic sum for multipole interactions and a vector relation for calculation of the Cartesian multipole tensor.

Authors:  Xiongwu Wu; Frank C Pickard; Bernard R Brooks
Journal:  J Chem Phys       Date:  2016-10-28       Impact factor: 3.488

3.  Origin of pKa Shifts of Internal Lysine Residues in SNase Studied Via Equal-Molar VMMS Simulations in Explicit Water.

Authors:  Xiongwu Wu; Juyong Lee; Bernard R Brooks
Journal:  J Phys Chem B       Date:  2016-10-18       Impact factor: 2.991

4.  Treating electrostatics with Wolf summation in combined quantum mechanical and molecular mechanical simulations.

Authors:  Pedro Ojeda-May; Jingzhi Pu
Journal:  J Chem Phys       Date:  2015-11-07       Impact factor: 3.488

5.  Critical test of isotropic periodic sum techniques with group-based cut-off schemes.

Authors:  Takuma Nozawa; Kenji Yasuoka; Kazuaki Z Takahashi
Journal:  Sci Rep       Date:  2018-03-08       Impact factor: 4.379

6.  A Virtual Mixture Approach to the Study of Multistate Equilibrium: Application to Constant pH Simulation in Explicit Water.

Authors:  Xiongwu Wu; Bernard R Brooks
Journal:  PLoS Comput Biol       Date:  2015-10-27       Impact factor: 4.475

7.  A fast and accurate computational method for the linear-combination-based isotropic periodic sum.

Authors:  Kazuaki Z Takahashi; Takuma Nozawa; Kenji Yasuoka
Journal:  Sci Rep       Date:  2018-08-08       Impact factor: 4.379

  7 in total

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