Literature DB >> 24781321

Discovering enhancers directly by activity.

Ross C Hardison1.   

Abstract

Entities:  

Mesh：

Year:  2014        PMID： 24781321      PMCID： PMC4487868          DOI： 10.1038/nmeth.2933

Source DB:  PubMed          Journal:  Nat Methods        ISSN： 1548-7091            Impact factor:   28.547


× No keyword cloud information.
  10 in total

1.  A deletion of the human beta-globin locus activation region causes a major alteration in chromatin structure and replication across the entire beta-globin locus.

Authors:  W C Forrester; E Epner; M C Driscoll; T Enver; M Brice; T Papayannopoulou; M Groudine
Journal:  Genes Dev       Date:  1990-10       Impact factor: 11.361

Review 2.  Gene regulatory networks and the evolution of animal body plans.

Authors:  Eric H Davidson; Douglas H Erwin
Journal:  Science       Date:  2006-02-10       Impact factor: 47.728

3.  Systematic localization of common disease-associated variation in regulatory DNA.

Authors:  Matthew T Maurano; Richard Humbert; Eric Rynes; Robert E Thurman; Eric Haugen; Hao Wang; Alex P Reynolds; Richard Sandstrom; Hongzhu Qu; Jennifer Brody; Anthony Shafer; Fidencio Neri; Kristen Lee; Tanya Kutyavin; Sandra Stehling-Sun; Audra K Johnson; Theresa K Canfield; Erika Giste; Morgan Diegel; Daniel Bates; R Scott Hansen; Shane Neph; Peter J Sabo; Shelly Heimfeld; Antony Raubitschek; Steven Ziegler; Chris Cotsapas; Nona Sotoodehnia; Ian Glass; Shamil R Sunyaev; Rajinder Kaul; John A Stamatoyannopoulos
Journal:  Science       Date:  2012-09-05       Impact factor: 47.728

4.  Complex effects of nucleotide variants in a mammalian cis-regulatory element.

Authors:  Jamie C Kwasnieski; Ilaria Mogno; Connie A Myers; Joseph C Corbo; Barak A Cohen
Journal:  Proc Natl Acad Sci U S A       Date:  2012-11-05       Impact factor: 11.205

Review 5.  Genomic approaches towards finding cis-regulatory modules in animals.

Authors:  Ross C Hardison; James Taylor
Journal:  Nat Rev Genet       Date:  2012-06-18       Impact factor: 53.242

6.  Adaptive evolution of pelvic reduction in sticklebacks by recurrent deletion of a Pitx1 enhancer.

Authors:  Yingguang Frank Chan; Melissa E Marks; Felicity C Jones; Guadalupe Villarreal; Michael D Shapiro; Shannon D Brady; Audrey M Southwick; Devin M Absher; Jane Grimwood; Jeremy Schmutz; Richard M Myers; Dmitri Petrov; Bjarni Jónsson; Dolph Schluter; Michael A Bell; David M Kingsley
Journal:  Science       Date:  2009-12-10       Impact factor: 47.728

7.  Systematic dissection of regulatory motifs in 2000 predicted human enhancers using a massively parallel reporter assay.

Authors:  Pouya Kheradpour; Jason Ernst; Alexandre Melnikov; Peter Rogov; Li Wang; Xiaolan Zhang; Jessica Alston; Tarjei S Mikkelsen; Manolis Kellis
Journal:  Genome Res       Date:  2013-03-19       Impact factor: 9.043

8.  FIREWACh: high-throughput functional detection of transcriptional regulatory modules in mammalian cells.

Authors:  Matthew Murtha; Zeynep Tokcaer-Keskin; Zuojian Tang; Francesco Strino; Xi Chen; Yatong Wang; Xiangmei Xi; Claudio Basilico; Stuart Brown; Richard Bonneau; Yuval Kluger; Lisa Dailey
Journal:  Nat Methods       Date:  2014-03-23       Impact factor: 28.547

9.  An integrated encyclopedia of DNA elements in the human genome.

Authors: 
Journal:  Nature       Date:  2012-09-06       Impact factor: 49.962

10.  Function-based identification of mammalian enhancers using site-specific integration.

Authors:  Diane E Dickel; Yiwen Zhu; Alex S Nord; John N Wylie; Jennifer A Akiyama; Veena Afzal; Ingrid Plajzer-Frick; Aileen Kirkpatrick; Berthold Göttgens; Benoit G Bruneau; Axel Visel; Len A Pennacchio
Journal:  Nat Methods       Date:  2014-03-23       Impact factor: 28.547
  10 in total
  1 in total

1.  eRFSVM: a hybrid classifier to predict enhancers-integrating random forests with support vector machines.

Authors:  Fang Huang; Jiawei Shen; Qingli Guo; Yongyong Shi
Journal:  Hereditas       Date:  2016-06-30       Impact factor: 3.271
  1 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.