| Literature DB >> 24781056 |
Hong-Leong Cheah1, Vuanghao Lim2, Doblin Sandai1.
Abstract
Candida albicans is an opportunistic pathogen that causes candidiasis in humans. In recent years, metabolic pathways in C. albicans have been explored as potential antifungal targets to treat candidiasis. The glyoxylate cycle, which enables C. albicans to survive in nutrient-limited host niches and its. Key enzymes (e.g., isocitrate lyase (ICL1), are particularly attractive antifungal targets for C. albicans. In this study, we used a new screening approach that better reflects the physiological environment that C. albicans cells experience during infection to identify potential inhibitors of ICL. Three compounds (caffeic acid (CAFF), rosmarinic acid (ROS), and apigenin (API)) were found to have antifungal activity against C. albicans when tested under glucose-depleted conditions. We further confirmed the inhibitory potential of these compounds against ICL using the ICL enzyme assay. Lastly, we assessed the bioavailability and toxicity of these compounds using Lipinski's rule-of-five and ADMET analysis.Entities:
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Year: 2014 PMID: 24781056 PMCID: PMC4004578 DOI: 10.1371/journal.pone.0095951
Source DB: PubMed Journal: PLoS One ISSN: 1932-6203 Impact factor: 3.240
Figure 1TCA cycle (black arrows) and glyoxylate cycle (dashed arrows).
In both cycles, oxaloacetate serves as the precursor for gluconeogenesis, but the glyoxylate cycle bypasses the carbon dioxide generating steps of the TCA cycle via isocitrate lyase and malate synthase, thus conserving the carbons for gluconeogenesis. Adapted from Lorenz and Fink (2002) [9].
Figure 2Drugs and plant reference compounds used in this study with their PubChem IDs.
Figure 3Alternative antifungal screening approach for C. albicans in YNB broth supplemented with glucose or lactate as the sole carbon source.
The chart represents the averaged growth percentage with error bars of representation standard deviation. ITC is the known ICL inhibitor that served as the positive control in this experiment: it reduced the growth of C. albicans only in the lactate-supplemented medium. CAFF, ROS, and API caused growth reduction similar to that ITC, and hence were selected as potential ICL inhibitors for further analysis. QCT and CINN showed growth reduction in both media, which indicates non-specific inhibition or different targets. RT was the only compound that showed a glucose-specific pattern of growth reduction.
Figure 4Inhibitory percentage of tested compounds in the ICL enzyme inhibition assay.
The chart represents the averaged inhibitory percentage with error bars representing standard deviation. ITC is the known ICL inhibitor that served as the positive control in this experiment. CAFF, API, and ROS are the potential ICL inhibitors identified in the alternative screening experiment; they showed inhibition of ICL activity that was similar to that of ITC, with inhibitory percentage higher than 40% (in contrast to QCT, CINN, GALL, and RT).
MIC determination of potential inhibitors of ICL1 in C. albicans in YNB medium.
| Potential ICL inhibitors/drugs | MIC (mg/L) |
| Fluconazole | 32; 0.5 (YNBG) |
| Itaconic acid | 250 |
| Caffeic acid | 1000 |
| Rosmarinic acid | 1000 |
| Apigenin | 125 |
Lipinski's rule-of-five drug-likeness properties of potential ICL inhibitors.
| Compound | FLC | ITC | CAFF | ROS | API |
|
| −0.118 | −0.343 | 0.941 | 1.626 | 2.463 |
|
| 81.664 | 74.598 | 77.755 | 144.516 | 90.895 |
|
| 22 | 9 | 13 | 26 | 20 |
|
| 306.276 | 130.099 | 180.159 | 360.318 | 270.24 |
|
| 7 | 4 | 4 | 8 | 5 |
|
| 1 | 2 | 3 | 5 | 3 |
|
| 0 | 0 | 0 | 0 | 0 |
|
| 5 | 3 | 2 | 7 | 1 |
|
| 248.957 | 111.171 | 154.497 | 303.539 | 224.049 |
Abbreviations: Mi LogP (hydrophobicity measurement: octanol/water partition coefficient); TPSA (topological polar surface area); n atoms (number of atoms); MW (molecular weight); n ON (hydrogen bond acceptor); n OHNH (number of hydrogen bond donor); n violations (number of Lipinski's rule-of-five violations); n rotb (number of rotatable bonds); MV (molecular volume).
High bioavailability are more probable for a compound when there are ≤5 hydrogen bond donors, ≤10 hydrogen bond acceptors, molecular weight ≤500, and Mi LogP ≤5; violation more than one of these rules may have problem with bioavailability [26].
ADMET properties of potential ICL inhibitors.
| ADMET | FLC | ITC | CAFF | API | ROS |
|
| + | + | - | + | + |
|
| + | + | + | + | + |
|
| + | - | + | + | - |
|
| – 1.8626 | –0.7363 | –1.6939 | –2.7765 | –3.2050 |
|
| |||||
| Substrate | - | - | - | - | + |
| Inhibitor | - | - | - | - | - |
|
| |||||
| CYP450 2C9 | - | - | - | - | - |
| CYP450 2D6 | - | - | - | - | - |
| CYP450 3A4 | - | - | - | - | - |
|
| |||||
| CYP450 1A2 | - | - | - | + | - |
| CYP450 2C9 | - | - | - | + | - |
| CYP450 2C19 | + | - | - | + | - |
| CYP450 2D6 | - | - | - | - | - |
| CYP450 3A4 | - | - | - | + | - |
|
| low | low | low | low | low |
|
| - | - | - | - | - |
|
| |||||
| HERG-I | weak | weak | weak | weak | weak |
| HERG-II | - | - | - | - | - |
|
| - | - | - | - | - |
|
| - | - | - | - | - |
|
| 2.4136 | 2.4525 | 1.4041 | 2.6983 | 2.3234 |
|
| high, 1.4529 | high, 0.8180 | high, 0.7921 | high, 0.8038 | high, –0.1231 |
|
| high, 0.5995 | low, −0.5487 | high, −0.2480 | high, 0.3341 | high, 0.8320 |
Abbreviations: BBB (blood-brain barrier); HIA (human intestinal absorption); Caco-2 (Caco-2 permeability); P-gp (P-glycoprotein); ROCT (renal organic cation transporter); CYP450 (cytochrome P450); CYP IP (CYP inhibitory promiscuity); HERG (human ether-a-go-go-related genes); RAT (rat acute toxicity); FT (fish toxicity); TPT (Tetrahymena pyriformis toxicity).
BBB, HIA, Caco-2, and aqueous solubility indicate the bioavailability of the drug in terms of absorption into the human body; P-gp, CYP450, and CYP IP indicate the metabolism, clearance, and risk of drug-drug interaction with the co-administered drug; ROCT indicates the renal excretion of the drug; HERG indicates the risk of cardiotoxicity caused by the drug; AMES toxicity indicates the risk of carcinogenicity and genotoxicity caused by the drug; RAT, LD50 is the lethal dosage of drug when tested on mice; FT and TPT are the environmental risk assessments of the drug based on fish and Tetrahymena pyriformis as environmental indicators, respectively.