Literature DB >> 24780275

CAZyme discovery and design for sweet dreams.

Isabelle André1, Gabrielle Potocki-Véronèse1, Sophie Barbe1, Claire Moulis1, Magali Remaud-Siméon2.   

Abstract

Development of synthetic routes to complex carbohydrates and glyco-conjugates is often hampered by the lack of enzymes with requisite properties or specificities. Indeed, assembly or degradation of carbohydrates requires carbohydrate-active enzymes (CAZymes) able to act on a vast range of glycosidic monomers, oligomers or polymers in a regio-specific or stereo-specific manner in order to produce the desired structure. Sequence-based analyses allow finding the most original enzymes. Novel screening methods have emerged that enable a more efficient exploitation of the CAZyme diversity found in the microbial world or generated by protein engineering. Computational biology methods also play a prominent role in the success of CAZyme design. Such progress allows circumventing current limitations of carbohydrate synthesis and opens new opportunities related to the synthetic biology field.
Copyright © 2014 Elsevier Ltd. All rights reserved.

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Year:  2014        PMID: 24780275     DOI: 10.1016/j.cbpa.2013.11.014

Source DB:  PubMed          Journal:  Curr Opin Chem Biol        ISSN: 1367-5931            Impact factor:   8.822


  17 in total

1.  Diversity of Microbial Carbohydrate-Active enZYmes (CAZYmes) Associated with Freshwater and Soil Samples from Caatinga Biome.

Authors:  Ana Camila Andrade; Adriana Fróes; Fabyano Álvares Cardoso Lopes; Fabiano L Thompson; Ricardo Henrique Krüger; Elizabeth Dinsdale; Thiago Bruce
Journal:  Microb Ecol       Date:  2017-01-09       Impact factor: 4.552

Review 2.  GH13 amylosucrases and GH70 branching sucrases, atypical enzymes in their respective families.

Authors:  Claire Moulis; Isabelle André; Magali Remaud-Simeon
Journal:  Cell Mol Life Sci       Date:  2016-05-03       Impact factor: 9.261

Review 3.  Harnessing glycoenzyme engineering for synthesis of bioactive oligosaccharides.

Authors:  Mounir Benkoulouche; Régis Fauré; Magali Remaud-Siméon; Claire Moulis; Isabelle André
Journal:  Interface Focus       Date:  2019-02-15       Impact factor: 3.906

Review 4.  Carbohydrate active enzyme domains from extreme thermophiles: components of a modular toolbox for lignocellulose degradation.

Authors:  Jonathan Botha; Eshchar Mizrachi; Alexander A Myburg; Don A Cowan
Journal:  Extremophiles       Date:  2017-11-06       Impact factor: 2.395

Review 5.  Discovery of new protein families and functions: new challenges in functional metagenomics for biotechnologies and microbial ecology.

Authors:  Lisa Ufarté; Gabrielle Potocki-Veronese; Élisabeth Laville
Journal:  Front Microbiol       Date:  2015-06-05       Impact factor: 5.640

6.  Performance of Hidden Markov Models in Recovering the Standard Classification of Glycoside Hydrolases.

Authors:  Mariana Fonseca Rossi; Beatriz Mello; Carlos G Schrago
Journal:  Evol Bioinform Online       Date:  2017-04-20       Impact factor: 1.625

7.  Functional metagenomics reveals novel β-galactosidases not predictable from gene sequences.

Authors:  Jiujun Cheng; Tatyana Romantsov; Katja Engel; Andrew C Doxey; David R Rose; Josh D Neufeld; Trevor C Charles
Journal:  PLoS One       Date:  2017-03-08       Impact factor: 3.240

Review 8.  Enzymatic Synthesis of Glycans and Glycoconjugates.

Authors:  Thomas Rexer; Dominic Laaf; Johannes Gottschalk; Hannes Frohnmeyer; Erdmann Rapp; Lothar Elling
Journal:  Adv Biochem Eng Biotechnol       Date:  2021       Impact factor: 2.635

9.  Two new gene clusters involved in the degradation of plant cell wall from the fecal microbiota of Tunisian dromedary.

Authors:  Rihab Ameri; Elisabeth Laville; Gabrielle Potocki-Véronèse; Sahar Trabelsi; Monia Mezghani; Fatma Elgharbi; Samir Bejar
Journal:  PLoS One       Date:  2018-03-30       Impact factor: 3.240

10.  The response to selection in Glycoside Hydrolase Family 13 structures: A comparative quantitative genetics approach.

Authors:  Jose Sergio Hleap; Christian Blouin
Journal:  PLoS One       Date:  2018-04-26       Impact factor: 3.240

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