Literature DB >> 24779593

Droplet digital PCR technology promises new applications and research areas.

P Manoj1.   

Abstract

Digital Polymerase Chain Reaction (dPCR) is used to quantify nucleic acids and its applications are in the detection and precise quantification of low-level pathogens, rare genetic sequences, quantification of copy number variants, rare mutations and in relative gene expressions. Here the PCR is performed in large number of reaction chambers or partitions and the reaction is carried out in each partition individually. This separation allows a more reliable collection and sensitive measurement of nucleic acid. Results are calculated by counting amplified target sequence (positive droplets) and the number of partitions in which there is no amplification (negative droplets). The mean number of target sequences was calculated by Poisson Algorithm. Poisson correction compensates the presence of more than one copy of target gene in any droplets. The method provides information with accuracy and precision which is highly reproducible and less susceptible to inhibitors than qPCR. It has been demonstrated in studying variations in gene sequences, such as copy number variants and point mutations, distinguishing differences between expression of nearly identical alleles, assessment of clinically relevant genetic variations and it is routinely used for clonal amplification of samples for NGS methods. dPCR enables more reliable predictors of tumor status and patient prognosis by absolute quantitation using reference normalizations. Rare mitochondrial DNA deletions associated with a range of diseases and disorders as well as aging can be accurately detected with droplet digital PCR.

Entities:  

Keywords:  Gene copy number; qPCR; real-time PCR

Mesh:

Substances:

Year:  2014        PMID: 24779593     DOI: 10.3109/19401736.2014.913168

Source DB:  PubMed          Journal:  Mitochondrial DNA A DNA Mapp Seq Anal        ISSN: 2470-1394            Impact factor:   1.514


  12 in total

1.  Reply: Mitochondrial DNA copy number differentiates the Leber's hereditary optic neuropathy affected individuals from the unaffected mutation carriers.

Authors:  Carla Giordano; Valerio Carelli
Journal:  Brain       Date:  2015-07-23       Impact factor: 13.501

2.  The Predominant Prognostic Significance of NOTCH1 Mutation Defined by Emulsion PCR in Chronic Lymphocytic Leukemia.

Authors:  Katarzyna Skórka; Michał Chojnacki; Marta Masternak; Agnieszka Karczmarczyk; Edyta Subocz; Ewa Wawrzyniak; Krzysztof Giannopoulos
Journal:  Cancer Manag Res       Date:  2021-05-06       Impact factor: 3.989

3.  Application of Droplet Digital PCR for Estimating Vector Copy Number States in Stem Cell Gene Therapy.

Authors:  Huan-Ting Lin; Takashi Okumura; Yukinori Yatsuda; Satoru Ito; Hiromitsu Nakauchi; Makoto Otsu
Journal:  Hum Gene Ther Methods       Date:  2016-10       Impact factor: 2.396

4.  Comparison of paired cerebrospinal fluid and serum cell-free mitochondrial and nuclear DNA with copy number and fragment length.

Authors:  Aolong Chen; Jun Li; Lei Wang; Qin Huang; Jiajin Zhu; Shumeng Wen; Jianxin Lyu; Wenhe Wu
Journal:  J Clin Lab Anal       Date:  2020-02-13       Impact factor: 2.352

5.  Clonal expansion of mtDNA deletions: different disease models assessed by digital droplet PCR in single muscle cells.

Authors:  Selena Trifunov; Angela Pyle; Maria Lucia Valentino; Rocco Liguori; Patrick Yu-Wai-Man; Florence Burté; Jennifer Duff; Stephanie Kleinle; Isabel Diebold; Michela Rugolo; Rita Horvath; Valerio Carelli
Journal:  Sci Rep       Date:  2018-08-03       Impact factor: 4.379

6.  Digital PCR Detection of mtDNA/gDNA Ratio in Embryo Culture Medium for Prediction of Embryo Development Potential.

Authors:  Qing Zhang; Hong Ji; Jian Shi; Longmei Wang; Lu Ding; Yufei Jiang; Xianjing Huang; Pingping Qiu; Ping Li
Journal:  Pharmgenomics Pers Med       Date:  2021-04-30

Review 7.  Copy Number Variation and Rearrangements Assessment in Cancer: Comparison of Droplet Digital PCR with the Current Approaches.

Authors:  Vincenza Ylenia Cusenza; Alessandra Bisagni; Monia Rinaldini; Chiara Cattani; Raffaele Frazzi
Journal:  Int J Mol Sci       Date:  2021-04-29       Impact factor: 5.923

8.  Digital PCR methods improve detection sensitivity and measurement precision of low abundance mtDNA deletions.

Authors:  Frances R Belmonte; James L Martin; Kristin Frescura; Joana Damas; Filipe Pereira; Mark A Tarnopolsky; Brett A Kaufman
Journal:  Sci Rep       Date:  2016-04-28       Impact factor: 4.379

Review 9.  Preclinical Development of Autologous Hematopoietic Stem Cell-Based Gene Therapy for Immune Deficiencies: A Journey from Mouse Cage to Bed Side.

Authors:  Laura Garcia-Perez; Anita Ordas; Kirsten Canté-Barrett; Pauline Meij; Karin Pike-Overzet; Arjan Lankester; Frank J T Staal
Journal:  Pharmaceutics       Date:  2020-06-13       Impact factor: 6.321

10.  Quantitative evaluation of the molecular marker using droplet digital PCR.

Authors:  Wonseok Shin; Haneul Kim; Dong-Yep Oh; Dong Hee Kim; Kyudong Han
Journal:  Genomics Inform       Date:  2020-03-31
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