Literature DB >> 2477801

Catalytic activity is retained in the Tetrahymena group I intron despite removal of the large extension of element P5.

G F Joyce1, G van der Horst, T Inoue.   

Abstract

We have made sizeable internal deletions within the self-splicing group I intron of Tetrahymena thermophila. Deletions were made in a piecewise manner in order to remove secondary structural elements thought to be extraneous to the catalytic center of the molecule. The resulting deletion mutants retain self-splicing activity, albeit under modified reaction conditions that enhance duplex stability. Considering those portions of the molecule that can be deleted without a loss of catalytic activity, one is left with a catalytic center of approximately 130 nucleotides that is solely responsible for the molecule's activity.

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Year:  1989        PMID: 2477801      PMCID: PMC334894          DOI: 10.1093/nar/17.19.7879

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  31 in total

1.  Defining the inside and outside of a catalytic RNA molecule.

Authors:  J A Latham; T R Cech
Journal:  Science       Date:  1989-07-21       Impact factor: 47.728

2.  A labile phosphodiester bond at the ligation junction in a circular intervening sequence RNA.

Authors:  A J Zaug; J R Kent; T R Cech
Journal:  Science       Date:  1984-05-11       Impact factor: 47.728

3.  Autocatalytic cyclization of an excised intervening sequence RNA is a cleavage-ligation reaction.

Authors:  A J Zaug; P J Grabowski; T R Cech
Journal:  Nature       Date:  1983 Feb 17-23       Impact factor: 49.962

4.  Cloning and expression of the gene for bacteriophage T7 RNA polymerase.

Authors:  P Davanloo; A H Rosenberg; J J Dunn; F W Studier
Journal:  Proc Natl Acad Sci U S A       Date:  1984-04       Impact factor: 11.205

Review 5.  RNA splicing: three themes with variations.

Authors:  T R Cech
Journal:  Cell       Date:  1983-10       Impact factor: 41.582

6.  Making ends meet: a model for RNA splicing in fungal mitochondria.

Authors:  R W Davies; R B Waring; J A Ray; T A Brown; C Scazzocchio
Journal:  Nature       Date:  1982-12-23       Impact factor: 49.962

7.  Bacteriophage SP6-specific RNA polymerase. I. Isolation and characterization of the enzyme.

Authors:  E T Butler; M J Chamberlin
Journal:  J Biol Chem       Date:  1982-05-25       Impact factor: 5.157

8.  Self-splicing RNA: autoexcision and autocyclization of the ribosomal RNA intervening sequence of Tetrahymena.

Authors:  K Kruger; P J Grabowski; A J Zaug; J Sands; D E Gottschling; T R Cech
Journal:  Cell       Date:  1982-11       Impact factor: 41.582

9.  Comparison of fungal mitochondrial introns reveals extensive homologies in RNA secondary structure.

Authors:  F Michel; A Jacquier; B Dujon
Journal:  Biochimie       Date:  1982-10       Impact factor: 4.079

10.  Conservation of RNA secondary structures in two intron families including mitochondrial-, chloroplast- and nuclear-encoded members.

Authors:  F Michel; B Dujon
Journal:  EMBO J       Date:  1983       Impact factor: 11.598

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  29 in total

1.  Design of highly specific cytotoxins by using trans-splicing ribozymes.

Authors:  B G Ayre; U Köhler; H M Goodman; J Haseloff
Journal:  Proc Natl Acad Sci U S A       Date:  1999-03-30       Impact factor: 11.205

2.  Design and development of a catalytic ribonucleoprotein.

Authors:  S Atsumi; Y Ikawa; H Shiraishi; T Inoue
Journal:  EMBO J       Date:  2001-10-01       Impact factor: 11.598

3.  Structure-function relationships of two closely related group IC3 intron ribozymes from Azoarcus and Synechococcus pre-tRNA.

Authors:  Y Ikawa; D Naito; H Shiraishi; T Inoue
Journal:  Nucleic Acids Res       Date:  2000-09-01       Impact factor: 16.971

4.  Putative intermediary stages for the molecular evolution from a ribozyme to a catalytic RNP.

Authors:  Yoshiya Ikawa; Kentaro Tsuda; Shigeyoshi Matsumura; Shota Atsumi; Tan Inoue
Journal:  Nucleic Acids Res       Date:  2003-03-01       Impact factor: 16.971

5.  Optimization of trans-splicing ribozyme efficiency and specificity by in vivo genetic selection.

Authors:  Brian G Ayre; Uwe Köhler; Robert Turgeon; Jim Haseloff
Journal:  Nucleic Acids Res       Date:  2002-12-15       Impact factor: 16.971

6.  Group II introns deleted for multiple substructures retain self-splicing activity.

Authors:  J L Koch; S C Boulanger; S D Dib-Hajj; S K Hebbar; P S Perlman
Journal:  Mol Cell Biol       Date:  1992-05       Impact factor: 4.272

7.  Predicting RNA folding thermodynamics with a reduced chain representation model.

Authors:  Song Cao; Shi-Jie Chen
Journal:  RNA       Date:  2005-10-26       Impact factor: 4.942

8.  Structural specificity conferred by a group I RNA peripheral element.

Authors:  Travis H Johnson; Pilar Tijerina; Amanda B Chadee; Daniel Herschlag; Rick Russell
Journal:  Proc Natl Acad Sci U S A       Date:  2005-07-11       Impact factor: 11.205

9.  Kinetic redistribution of native and misfolded RNAs by a DEAD-box chaperone.

Authors:  Hari Bhaskaran; Rick Russell
Journal:  Nature       Date:  2007-10-25       Impact factor: 49.962

10.  P2 functions as a spacer in the Tetrahymena ribozyme.

Authors:  A Peyman
Journal:  Nucleic Acids Res       Date:  1994-04-25       Impact factor: 16.971

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