Literature DB >> 24769699

Elucidating the process of activation of methyl-coenzyme M reductase.

Divya Prakash1, Yonnie Wu1, Sang-Jin Suh2, Evert C Duin3.   

Abstract

Methyl-coenzyme M reductase (MCR) catalyzes the reversible reduction of methyl-coenzyme M (CH3-S-CoM) and coenzyme B (HS-CoB) to methane and heterodisulfide CoM-S-S-CoB (HDS). MCR contains the hydroporphinoid nickel complex coenzyme F430 in its active site, and the Ni center has to be in its Ni(I) valence state for the enzyme to be active. Until now, no in vitro method that fully converted the inactive MCRsilent-Ni(II) form to the active MCRred1-Ni(I) form has been described. With the potential use of recombinant MCR in the production of biofuels and the need to better understand this enzyme and its activation process, we studied its activation under nonturnover conditions and achieved full MCR activation in the presence of dithiothreitol and protein components A2, an ATP carrier, and A3a. It was found that the presence of HDS promotes the inactivation of MCRred1, which makes it essential that the activation process is isolated from the methane formation assay, which tends to result in minimal activation rates. Component A3a is a multienzyme complex that includes the mcrC gene product, an Fe-protein homolog, an iron-sulfur flavoprotein, and protein components involved in electron bifurcation. A hypothetical model for the cellular activation process of MCR is presented.
Copyright © 2014, American Society for Microbiology. All Rights Reserved.

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Year:  2014        PMID: 24769699      PMCID: PMC4054172          DOI: 10.1128/JB.01658-14

Source DB:  PubMed          Journal:  J Bacteriol        ISSN: 0021-9193            Impact factor:   3.490


  27 in total

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Authors:  Seigo Shima; Martin Krueger; Tobias Weinert; Ulrike Demmer; Jörg Kahnt; Rudolf K Thauer; Ulrich Ermler
Journal:  Nature       Date:  2011-11-27       Impact factor: 49.962

2.  Formation of a nickel-methyl species in methyl-coenzyme m reductase, an enzyme catalyzing methane formation.

Authors:  Na Yang; Markus Reiher; Mi Wang; Jeffrey Harmer; Evert C Duin
Journal:  J Am Chem Soc       Date:  2007-08-21       Impact factor: 15.419

3.  Methyl-coenzyme M reductase from Methanothermobacter marburgensis.

Authors:  Evert C Duin; Divya Prakash; Charlene Brungess
Journal:  Methods Enzymol       Date:  2011       Impact factor: 1.600

4.  Activation of methyl-SCoM reductase to high specific activity after treatment of whole cells with sodium sulfide.

Authors:  D F Becker; S W Ragsdale
Journal:  Biochemistry       Date:  1998-02-24       Impact factor: 3.162

5.  The final step in methane formation. Investigations with highly purified methyl-CoM reductase (component C) from Methanobacterium thermoautotrophicum (strain Marburg).

Authors:  J Ellermann; R Hedderich; R Böcher; R K Thauer
Journal:  Eur J Biochem       Date:  1988-03-15

6.  Structural analysis of a Ni-methyl species in methyl-coenzyme M reductase from Methanothermobacter marburgensis.

Authors:  Peder E Cedervall; Mishtu Dey; Xianghui Li; Ritimukta Sarangi; Britt Hedman; Stephen W Ragsdale; Carrie M Wilmot
Journal:  J Am Chem Soc       Date:  2011-03-25       Impact factor: 15.419

7.  Reductive activation of the methyl coenzyme M methylreductase system of Methanobacterium thermoautotrophicum delta H.

Authors:  P E Rouvière; T A Bobik; R S Wolfe
Journal:  J Bacteriol       Date:  1988-09       Impact factor: 3.490

8.  Ab initio calculations on the thermodynamic properties of azaborospiropentanes.

Authors:  Ryan M Richard; David W Ball
Journal:  J Mol Model       Date:  2008-07-02       Impact factor: 1.810

9.  Electrochemical and spectroscopic properties of the iron-sulfur flavoprotein from Methanosarcina thermophila.

Authors:  D F Becker; U Leartsakulpanich; K K Surerus; J G Ferry; S W Ragsdale
Journal:  J Biol Chem       Date:  1998-10-09       Impact factor: 5.157

10.  In vivo activation of methyl-coenzyme M reductase by carbon monoxide.

Authors:  Yuzhen Zhou; Alexandria E Dorchak; Stephen W Ragsdale
Journal:  Front Microbiol       Date:  2013-04-01       Impact factor: 5.640

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  10 in total

1.  Phylogenetic and Structural Comparisons of the Three Types of Methyl Coenzyme M Reductase from Methanococcales and Methanobacteriales.

Authors:  Tristan Wagner; Carl-Eric Wegner; Jörg Kahnt; Ulrich Ermler; Seigo Shima
Journal:  J Bacteriol       Date:  2017-07-25       Impact factor: 3.490

2.  The reaction mechanism of methyl-coenzyme M reductase: how an enzyme enforces strict binding order.

Authors:  Thanyaporn Wongnate; Stephen W Ragsdale
Journal:  J Biol Chem       Date:  2015-02-17       Impact factor: 5.157

3.  Expression of divergent methyl/alkyl coenzyme M reductases from uncultured archaea.

Authors:  Nana Shao; Yu Fan; Chau-Wen Chou; Shadi Yavari; Robert V Williams; I Jonathan Amster; Stuart M Brown; Ian J Drake; Evert C Duin; William B Whitman; Yuchen Liu
Journal:  Commun Biol       Date:  2022-10-20

4.  Mode of action uncovered for the specific reduction of methane emissions from ruminants by the small molecule 3-nitrooxypropanol.

Authors:  Evert C Duin; Tristan Wagner; Seigo Shima; Divya Prakash; Bryan Cronin; David R Yáñez-Ruiz; Stephane Duval; Robert Rümbeli; René T Stemmler; Rudolf Kurt Thauer; Maik Kindermann
Journal:  Proc Natl Acad Sci U S A       Date:  2016-05-02       Impact factor: 11.205

5.  Assembly of Methyl Coenzyme M Reductase in the Methanogenic Archaeon Methanococcus maripaludis.

Authors:  Zhe Lyu; Chau-Wen Chou; Hao Shi; Liangliang Wang; Robel Ghebreab; Dennis Phillips; Yajun Yan; Evert C Duin; William B Whitman
Journal:  J Bacteriol       Date:  2018-03-12       Impact factor: 3.490

6.  Methyl (Alkyl)-Coenzyme M Reductases: Nickel F-430-Containing Enzymes Involved in Anaerobic Methane Formation and in Anaerobic Oxidation of Methane or of Short Chain Alkanes.

Authors:  Rudolf K Thauer
Journal:  Biochemistry       Date:  2019-04-05       Impact factor: 3.162

Review 7.  Overview of Diverse Methyl/Alkyl-Coenzyme M Reductases and Considerations for Their Potential Heterologous Expression.

Authors:  Aleksei Gendron; Kylie D Allen
Journal:  Front Microbiol       Date:  2022-04-25       Impact factor: 6.064

Review 8.  A Structural View of Alkyl-Coenzyme M Reductases, the First Step of Alkane Anaerobic Oxidation Catalyzed by Archaea.

Authors:  Olivier N Lemaire; Tristan Wagner
Journal:  Biochemistry       Date:  2022-05-02       Impact factor: 3.321

9.  Expanding the phylogenetic distribution of cytochrome b-containing methanogenic archaea sheds light on the evolution of methanogenesis.

Authors:  Ya-Fei Ou; Hong-Po Dong; Simon J McIlroy; Sean A Crowe; Steven J Hallam; Ping Han; Jens Kallmeyer; Rachel L Simister; Aurele Vuillemin; Andy O Leu; Zhanfei Liu; Yan-Ling Zheng; Qian-Li Sun; Min Liu; Gene W Tyson; Li-Jun Hou
Journal:  ISME J       Date:  2022-07-09       Impact factor: 11.217

10.  Proteomic Stable Isotope Probing Reveals Biosynthesis Dynamics of Slow Growing Methane Based Microbial Communities.

Authors:  Jeffrey J Marlow; Connor T Skennerton; Zhou Li; Karuna Chourey; Robert L Hettich; Chongle Pan; Victoria J Orphan
Journal:  Front Microbiol       Date:  2016-04-29       Impact factor: 5.640

  10 in total

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