Literature DB >> 24765044

5-((Meth-oxy-imino)-{2-[(2-methyl-phen-oxy)meth-yl]phen-yl}meth-yl)-N-phenyl-1,3,4-oxa-diazol-2-amine.

Devinder K Sharma1, Chetan S Shripanavar2, Sumati Anthal1, Vivek K Gupta1, Rajni Kant1.   

Abstract

In the title mol-ecule, C24H22N4O3, the plane of the oxa-diazole ring forms a dihedral angle of 32.41 (12)° with that of the phenyl ring and dihedral angles of 74.51 (10) and 56.38 (10)° with the planes of the benzene rings. In the crystal, pairs of N-H⋯N hydrogen bonds link molecules into inversion dimers featuring R 2 (2)(8) graph-set motifs.

Entities:  

Year:  2014        PMID: 24765044      PMCID: PMC3998470          DOI: 10.1107/S1600536814003821

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background information and applications of oxa­diazole derivatives, see: Schnurch et al. (2006 ▶); Crabtree (2005 ▶); Venkatakrishnan et al. (2000 ▶); Brown et al. (1992 ▶). For biological activity of oxa­diazole derivatives, see: Omar et al. (1996 ▶); Talawar et al. (1996 ▶); Hamad et al. (1996 ▶); Tully et al. (1991 ▶); Barry et al. (1991 ▶); Ladduwahetty et al. (1996 ▶); Borg et al. (1999 ▶). For standard bond lengths, see: Allen et al. (1987 ▶). For a related structure, see: Shang et al. (2005 ▶).

Experimental

Crystal data

C24H22N4O3 M = 414.46 Triclinic, a = 7.0629 (4) Å b = 12.5553 (9) Å c = 13.3705 (11) Å α = 68.321 (7)° β = 83.678 (6)° γ = 78.567 (6)° V = 1079.04 (13) Å3 Z = 2 Mo Kα radiation μ = 0.09 mm−1 T = 293 K 0.30 × 0.20 × 0.20 mm

Data collection

Oxford Diffraction Xcalibur Sapphire3 diffractometer Absorption correction: multi-scan (CrysAlis RED; Oxford Diffraction, 2010 ▶) T min = 0.874, T max = 1.000 7584 measured reflections 4233 independent reflections 2679 reflections with I > 2σ(I) R int = 0.023

Refinement

R[F 2 > 2σ(F 2)] = 0.047 wR(F 2) = 0.121 S = 1.01 4233 reflections 286 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.19 e Å−3 Δρmin = −0.15 e Å−3 Data collection: CrysAlis PRO (Oxford Diffraction, 2010 ▶); cell refinement: CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012 ▶) and PLATON (Spek, 2009 ▶); software used to prepare material for publication: PLATON. Crystal structure: contains datablock(s) I, New_Global_Publ_Block. DOI: 10.1107/S1600536814003821/lh5692sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536814003821/lh5692Isup2.hkl Click here for additional data file. Supporting information file. DOI: 10.1107/S1600536814003821/lh5692Isup3.cml CCDC reference: Additional supporting information: crystallographic information; 3D view; checkCIF report
C24H22N4O3Z = 2
Mr = 414.46F(000) = 436
Triclinic, P1Dx = 1.276 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 7.0629 (4) ÅCell parameters from 2043 reflections
b = 12.5553 (9) Åθ = 3.9–25.8°
c = 13.3705 (11) ŵ = 0.09 mm1
α = 68.321 (7)°T = 293 K
β = 83.678 (6)°Block, colourless
γ = 78.567 (6)°0.30 × 0.20 × 0.20 mm
V = 1079.04 (13) Å3
Oxford Diffraction Xcalibur Sapphire3 diffractometer4233 independent reflections
Radiation source: fine-focus sealed tube2679 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.023
Detector resolution: 16.1049 pixels mm-1θmax = 26.0°, θmin = 3.5°
ω scansh = −8→8
Absorption correction: multi-scan (CrysAlis RED; Oxford Diffraction, 2010)k = −15→13
Tmin = 0.874, Tmax = 1.000l = −16→13
7584 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.047Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.121H atoms treated by a mixture of independent and constrained refinement
S = 1.01w = 1/[σ2(Fo2) + (0.0476P)2] where P = (Fo2 + 2Fc2)/3
4233 reflections(Δ/σ)max = 0.001
286 parametersΔρmax = 0.19 e Å3
0 restraintsΔρmin = −0.15 e Å3
Experimental. CrysAlis PRO, Oxford Diffraction Ltd., Version 1.171.34.40 (release 27–08-2010 CrysAlis171. NET) (compiled Aug 27 2010,11:50:40) Empirical absorption correction using spherical harmonics, implemented in SCALE3 ABSPACK scaling algorithm.
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.59108 (16)0.51331 (10)0.15728 (10)0.0477 (3)
O20.09810 (18)0.40040 (11)0.31402 (11)0.0599 (4)
N50.2555 (2)0.44773 (13)0.25488 (13)0.0503 (4)
O30.57360 (17)0.21849 (12)0.42203 (11)0.0591 (4)
N30.7893 (2)0.43994 (14)0.04992 (13)0.0505 (4)
C10.3357 (2)0.25405 (15)0.23721 (14)0.0408 (4)
C20.4559 (3)0.15355 (15)0.29884 (15)0.0443 (5)
C170.5374 (2)0.41397 (15)0.15669 (15)0.0428 (4)
N40.6492 (2)0.36807 (13)0.09560 (13)0.0503 (4)
C70.6318 (3)0.15775 (16)0.34995 (16)0.0513 (5)
H7A0.69620.07940.38870.062*
H7B0.72160.19710.29490.062*
N60.8571 (2)0.60402 (15)0.07479 (14)0.0549 (5)
C160.3681 (2)0.37311 (15)0.22091 (14)0.0420 (4)
C180.7501 (3)0.52194 (16)0.09016 (15)0.0448 (5)
C80.7125 (3)0.22372 (16)0.48381 (16)0.0460 (5)
C90.9052 (3)0.17465 (16)0.47816 (16)0.0514 (5)
H90.94850.13680.42970.062*
C101.0330 (3)0.18281 (17)0.54587 (18)0.0599 (6)
H101.16310.15120.54190.072*
C15−0.0188 (3)0.48144 (17)0.35618 (17)0.0598 (5)
H15A0.05090.49150.40890.090*
H15B−0.13530.45270.38930.090*
H15C−0.05100.55480.29880.090*
C30.4104 (3)0.04676 (16)0.31252 (17)0.0576 (6)
H30.4885−0.02060.35420.069*
C60.1759 (3)0.24319 (18)0.19236 (16)0.0525 (5)
H60.09410.30980.15250.063*
C130.6458 (3)0.28167 (17)0.55509 (17)0.0540 (5)
C110.9692 (3)0.23681 (19)0.61822 (18)0.0621 (6)
H111.05490.24030.66460.074*
C120.7771 (3)0.28617 (18)0.62222 (17)0.0607 (6)
H120.73490.32340.67130.073*
C190.8052 (3)0.71032 (17)0.09168 (16)0.0536 (5)
C50.1362 (3)0.1356 (2)0.20575 (18)0.0628 (6)
H50.03020.12980.17370.075*
C40.2533 (3)0.0375 (2)0.26631 (19)0.0650 (6)
H40.2266−0.03540.27620.078*
C240.9531 (4)0.7683 (2)0.08959 (18)0.0709 (6)
H241.08060.73540.07980.085*
C220.7283 (6)0.9234 (2)0.1171 (2)0.1028 (10)
H220.70210.99510.12580.123*
C230.9130 (5)0.8743 (2)0.1019 (2)0.0896 (8)
H231.01370.91300.09970.108*
C200.6179 (3)0.7598 (2)0.1058 (2)0.0837 (8)
H200.51650.72230.10620.100*
C140.4381 (3)0.3382 (2)0.5583 (2)0.0883 (8)
H14A0.40590.39560.48880.133*
H14B0.41890.37480.61110.133*
H14C0.35670.28020.57710.133*
C210.5811 (5)0.8661 (2)0.1194 (3)0.1116 (10)
H210.45430.89920.13040.134*
H6'0.975 (3)0.5895 (19)0.039 (2)0.088 (8)*
U11U22U33U12U13U23
O10.0448 (7)0.0463 (7)0.0474 (8)−0.0087 (6)0.0157 (6)−0.0156 (6)
O20.0570 (8)0.0457 (8)0.0728 (10)−0.0148 (7)0.0342 (7)−0.0234 (7)
N50.0458 (9)0.0449 (9)0.0513 (11)−0.0104 (8)0.0191 (7)−0.0114 (8)
O30.0436 (8)0.0714 (9)0.0732 (11)−0.0007 (7)−0.0062 (7)−0.0419 (8)
N30.0400 (9)0.0536 (10)0.0539 (11)−0.0067 (8)0.0127 (7)−0.0193 (9)
C10.0410 (10)0.0443 (10)0.0348 (11)−0.0065 (8)0.0075 (8)−0.0144 (9)
C20.0458 (11)0.0436 (11)0.0424 (11)−0.0060 (9)0.0030 (8)−0.0162 (9)
C170.0406 (10)0.0390 (10)0.0426 (12)−0.0018 (8)0.0049 (8)−0.0117 (9)
N40.0422 (9)0.0528 (10)0.0534 (11)−0.0075 (8)0.0116 (7)−0.0200 (8)
C70.0509 (12)0.0461 (11)0.0528 (13)0.0024 (9)−0.0045 (9)−0.0178 (10)
N60.0481 (10)0.0530 (10)0.0604 (12)−0.0149 (9)0.0221 (8)−0.0203 (9)
C160.0389 (10)0.0398 (10)0.0396 (11)−0.0010 (8)0.0043 (8)−0.0097 (9)
C180.0379 (10)0.0484 (11)0.0395 (12)−0.0031 (9)0.0089 (8)−0.0110 (9)
C80.0406 (11)0.0459 (11)0.0514 (13)−0.0130 (9)−0.0007 (9)−0.0147 (9)
C90.0472 (11)0.0489 (11)0.0564 (13)−0.0068 (9)−0.0030 (9)−0.0175 (10)
C100.0468 (12)0.0605 (13)0.0670 (16)−0.0124 (10)−0.0052 (11)−0.0140 (12)
C150.0588 (13)0.0536 (12)0.0630 (14)−0.0063 (10)0.0255 (10)−0.0256 (11)
C30.0673 (14)0.0433 (11)0.0595 (14)−0.0084 (10)0.0009 (11)−0.0169 (10)
C60.0474 (11)0.0636 (13)0.0448 (12)−0.0046 (10)0.0010 (9)−0.0205 (10)
C130.0448 (11)0.0598 (12)0.0638 (14)−0.0206 (10)0.0104 (10)−0.0271 (11)
C110.0621 (14)0.0693 (14)0.0570 (15)−0.0264 (12)−0.0048 (11)−0.0167 (12)
C120.0643 (14)0.0704 (14)0.0591 (15)−0.0340 (12)0.0134 (11)−0.0297 (12)
C190.0650 (13)0.0486 (12)0.0401 (12)−0.0123 (11)0.0133 (9)−0.0105 (9)
C50.0560 (13)0.0876 (17)0.0600 (15)−0.0243 (13)0.0056 (11)−0.0401 (13)
C40.0752 (15)0.0620 (14)0.0699 (16)−0.0254 (13)0.0125 (12)−0.0346 (13)
C240.0824 (16)0.0648 (15)0.0629 (16)−0.0224 (13)0.0050 (12)−0.0170 (12)
C220.157 (3)0.0627 (17)0.089 (2)−0.027 (2)0.025 (2)−0.0315 (16)
C230.130 (3)0.0741 (18)0.0700 (19)−0.0429 (18)0.0010 (17)−0.0207 (15)
C200.0751 (17)0.0590 (15)0.112 (2)−0.0109 (13)0.0269 (14)−0.0335 (15)
C140.0543 (14)0.114 (2)0.129 (2)−0.0165 (14)0.0132 (14)−0.0842 (19)
C210.113 (2)0.0676 (18)0.140 (3)−0.0059 (18)0.0436 (19)−0.0384 (19)
O1—C181.354 (2)C15—H15B0.9600
O1—C171.377 (2)C15—H15C0.9600
O2—N51.3912 (18)C3—C41.372 (3)
O2—C151.422 (2)C3—H30.9300
N5—C161.287 (2)C6—C51.377 (3)
O3—C81.3759 (19)C6—H60.9300
O3—C71.418 (2)C13—C121.382 (3)
N3—C181.300 (2)C13—C141.501 (3)
N3—N41.407 (2)C11—C121.380 (3)
C1—C61.386 (2)C11—H110.9300
C1—C21.397 (2)C12—H120.9300
C1—C161.489 (2)C19—C201.370 (3)
C2—C31.382 (2)C19—C241.380 (3)
C2—C71.501 (2)C5—C41.365 (3)
C17—N41.284 (2)C5—H50.9300
C17—C161.456 (2)C4—H40.9300
C7—H7A0.9700C24—C231.371 (3)
C7—H7B0.9700C24—H240.9300
N6—C181.339 (2)C22—C231.356 (4)
N6—C191.406 (2)C22—C211.368 (4)
N6—H6'0.93 (2)C22—H220.9300
C8—C91.385 (2)C23—H230.9300
C8—C131.392 (3)C20—C211.383 (3)
C9—C101.389 (2)C20—H200.9300
C9—H90.9300C14—H14A0.9600
C10—C111.366 (3)C14—H14B0.9600
C10—H100.9300C14—H14C0.9600
C15—H15A0.9600C21—H210.9300
C18—O1—C17102.10 (15)C4—C3—C2121.79 (18)
N5—O2—C15109.64 (13)C4—C3—H3119.1
C16—N5—O2110.37 (14)C2—C3—H3119.1
C8—O3—C7117.77 (14)C5—C6—C1121.23 (18)
C18—N3—N4105.98 (15)C5—C6—H6119.4
C6—C1—C2119.05 (16)C1—C6—H6119.4
C6—C1—C16118.34 (15)C12—C13—C8117.91 (18)
C2—C1—C16122.56 (14)C12—C13—C14121.1 (2)
C3—C2—C1118.43 (16)C8—C13—C14120.98 (17)
C3—C2—C7119.19 (16)C10—C11—C12119.67 (18)
C1—C2—C7122.38 (16)C10—C11—H11120.2
N4—C17—O1112.81 (16)C12—C11—H11120.2
N4—C17—C16127.54 (17)C11—C12—C13121.6 (2)
O1—C17—C16119.65 (16)C11—C12—H12119.2
C17—N4—N3106.21 (14)C13—C12—H12119.2
O3—C7—C2108.75 (15)C20—C19—C24119.4 (2)
O3—C7—H7A109.9C20—C19—N6123.6 (2)
C2—C7—H7A109.9C24—C19—N6116.96 (19)
O3—C7—H7B109.9C4—C5—C6119.65 (17)
C2—C7—H7B109.9C4—C5—H5120.2
H7A—C7—H7B108.3C6—C5—H5120.2
C18—N6—C19129.13 (18)C5—C4—C3119.83 (19)
C18—N6—H6'111.4 (14)C5—C4—H4120.1
C19—N6—H6'118.8 (14)C3—C4—H4120.1
N5—C16—C17115.10 (16)C23—C24—C19120.3 (2)
N5—C16—C1126.20 (17)C23—C24—H24119.9
C17—C16—C1118.63 (16)C19—C24—H24119.9
N3—C18—N6125.74 (18)C23—C22—C21119.2 (3)
N3—C18—O1112.89 (17)C23—C22—H22120.4
N6—C18—O1121.25 (18)C21—C22—H22120.4
O3—C8—C9123.67 (17)C22—C23—C24120.8 (3)
O3—C8—C13115.14 (16)C22—C23—H23119.6
C9—C8—C13121.19 (17)C24—C23—H23119.6
C8—C9—C10119.03 (19)C19—C20—C21119.3 (3)
C8—C9—H9120.5C19—C20—H20120.3
C10—C9—H9120.5C21—C20—H20120.3
C11—C10—C9120.60 (19)C13—C14—H14A109.5
C11—C10—H10119.7C13—C14—H14B109.5
C9—C10—H10119.7H14A—C14—H14B109.5
O2—C15—H15A109.5C13—C14—H14C109.5
O2—C15—H15B109.5H14A—C14—H14C109.5
H15A—C15—H15B109.5H14B—C14—H14C109.5
O2—C15—H15C109.5C22—C21—C20121.1 (3)
H15A—C15—H15C109.5C22—C21—H21119.5
H15B—C15—H15C109.5C20—C21—H21119.5
C15—O2—N5—C16176.64 (15)C7—O3—C8—C13−178.30 (18)
C6—C1—C2—C30.1 (3)O3—C8—C9—C10−178.63 (18)
C16—C1—C2—C3177.78 (18)C13—C8—C9—C100.6 (3)
C6—C1—C2—C7179.86 (17)C8—C9—C10—C111.0 (3)
C16—C1—C2—C7−2.4 (3)C1—C2—C3—C40.8 (3)
C18—O1—C17—N4−0.61 (19)C7—C2—C3—C4−178.94 (19)
C18—O1—C17—C16179.83 (15)C2—C1—C6—C5−1.3 (3)
O1—C17—N4—N3−0.39 (19)C16—C1—C6—C5−179.06 (18)
C16—C17—N4—N3179.14 (16)O3—C8—C13—C12177.67 (17)
C18—N3—N4—C171.28 (19)C9—C8—C13—C12−1.7 (3)
C8—O3—C7—C2174.85 (15)O3—C8—C13—C14−2.7 (3)
C3—C2—C7—O3−120.2 (2)C9—C8—C13—C14177.93 (19)
C1—C2—C7—O360.0 (2)C9—C10—C11—C12−1.6 (3)
O2—N5—C16—C17179.34 (14)C10—C11—C12—C130.5 (3)
O2—N5—C16—C12.2 (2)C8—C13—C12—C111.1 (3)
N4—C17—C16—N5−164.43 (18)C14—C13—C12—C11−178.5 (2)
O1—C17—C16—N515.1 (2)C18—N6—C19—C20−14.8 (3)
N4—C17—C16—C112.9 (3)C18—N6—C19—C24167.7 (2)
O1—C17—C16—C1−167.60 (14)C1—C6—C5—C41.5 (3)
C6—C1—C16—N563.0 (3)C6—C5—C4—C3−0.6 (3)
C2—C1—C16—N5−114.7 (2)C2—C3—C4—C5−0.6 (3)
C6—C1—C16—C17−114.00 (19)C20—C19—C24—C230.2 (3)
C2—C1—C16—C1768.3 (2)N6—C19—C24—C23177.8 (2)
N4—N3—C18—N6174.36 (17)C21—C22—C23—C24−0.4 (4)
N4—N3—C18—O1−1.76 (19)C19—C24—C23—C220.5 (4)
C19—N6—C18—N3162.55 (19)C24—C19—C20—C21−1.0 (4)
C19—N6—C18—O1−21.6 (3)N6—C19—C20—C21−178.5 (2)
C17—O1—C18—N31.49 (19)C23—C22—C21—C20−0.5 (5)
C17—O1—C18—N6−174.82 (16)C19—C20—C21—C221.2 (4)
C7—O3—C8—C91.0 (3)
D—H···AD—HH···AD···AD—H···A
N6—H6′···N3i0.93 (2)1.99 (2)2.922 (2)174
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
N6—H6′⋯N3i 0.93 (2)1.99 (2)2.922 (2)174

Symmetry code: (i) .

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Authors:  F Omar; N Mahfouz; M Rahman
Journal:  Eur J Med Chem       Date:  1996       Impact factor: 6.514

7.  Comparison of azabicyclic esters and oxadiazoles as ligands for the muscarinic receptor.

Authors:  B S Orlek; F E Blaney; F Brown; M S Clark; M S Hadley; J Hatcher; G J Riley; H E Rosenberg; H J Wadsworth; P Wyman
Journal:  J Med Chem       Date:  1991-09       Impact factor: 7.446

8.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  8 in total

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