Literature DB >> 24764980

Fluoren-9-one oxime.

Bernhard Bugenhagen1, Yosef Al Jasem2, Mariam Al-Azani3, Thies Thiemann3.   

Abstract

In the title mol-ecule, C13H9NO, the fluorene system and the oxime group non-H atoms are essentially coplanar, with a maximum deviation from the fluorene mean plane of 0.079 (2) Å for the oxime O atom. A short intra-molecular C-H⋯O generates an S(6) ring. In the crystal, mol-ecules related by a twofold screw axis are connected by O-H⋯N hydrogen bonds, forming [100] chains Within these chains, mol-ecules related by a unit translation along [100] show π-π stacking inter-actions between their fluorene ring systems with an inter-planar distance of 3.347 (2) Å. The dihedral angle between the fluorene units of adjacent mol-ecules along the helix is 88.40 (2)°. There is a short C-H⋯π contact between the fluorene groups belonging to neighbouring chains.

Entities:  

Year:  2014        PMID: 24764980      PMCID: PMC3998413          DOI: 10.1107/S1600536814002669

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the original procedure for the preparation of the title compound, see: Moore & Huntress (1927 ▶). For the use of the title compound as a starting material for the synthesis of bioactive compounds, see: Amlaiky et al. (1983 ▶); Ni et al. (2009 ▶); Rad et al. (2012 ▶).

Experimental

Crystal data

C13H9NO M = 195.21 Orthorhombic, a = 4.8009 (1) Å b = 12.2309 (2) Å c = 16.0247 (3) Å V = 940.96 (3) Å3 Z = 4 Cu Kα radiation μ = 0.70 mm−1 T = 100 K 0.16 × 0.13 × 0.13 mm

Data collection

Agilent SuperNova (Dual, Cu at zero, Atlas) diffractometer Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2013 ▶) T min = 0.890, T max = 1.000 7588 measured reflections 1942 independent reflections 1865 reflections with I > 2σ(I) R int = 0.029

Refinement

R[F 2 > 2σ(F 2)] = 0.029 wR(F 2) = 0.075 S = 1.05 1942 reflections 140 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.13 e Å−3 Δρmin = −0.18 e Å−3 Absolute structure: Flack parameter determined using 735 quotients [(I +)−(I −)]/[(I +)+(I −)] (Parsons et al., 2013 ▶) Absolute structure parameter: 0.16 (13) Data collection: CrysAlis PRO (Agilent, 2013 ▶); cell refinement: CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶) within OLEX2 (Dolomanov et al., 2009 ▶); molecular graphics: PLATON (Spek, 2009 ▶) and Mercury (Macrae et al., 2008 ▶); software used to prepare material for publication: SHELXL97 and PLATON. Crystal structure: contains datablock(s) I. DOI: 10.1107/S1600536814002669/gk2601sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536814002669/gk2601Isup2.hkl Click here for additional data file. Supporting information file. DOI: 10.1107/S1600536814002669/gk2601Isup3.cml CCDC reference: Additional supporting information: crystallographic information; 3D view; checkCIF report
C13H9NODx = 1.378 Mg m3
Mr = 195.21Melting point = 471–472 K
Orthorhombic, P212121Cu Kα radiation, λ = 1.5418 Å
a = 4.8009 (1) ÅCell parameters from 3850 reflections
b = 12.2309 (2) Åθ = 4.5–76.1°
c = 16.0247 (3) ŵ = 0.70 mm1
V = 940.96 (3) Å3T = 100 K
Z = 4Block, colourless
F(000) = 4080.16 × 0.13 × 0.13 mm
Agilent SuperNova (Dual, Cu at zero, Atlas) diffractometer1942 independent reflections
Radiation source: SuperNova (Cu) X-ray Source1865 reflections with I > 2σ(I)
Mirror monochromatorRint = 0.029
Detector resolution: 10.4127 pixels mm-1θmax = 76.3°, θmin = 4.6°
ω scansh = −6→5
Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2013)k = −14→15
Tmin = 0.890, Tmax = 1.000l = −19→20
7588 measured reflections
Refinement on F2Hydrogen site location: difference Fourier map
Least-squares matrix: fullH atoms treated by a mixture of independent and constrained refinement
R[F2 > 2σ(F2)] = 0.029w = 1/[σ2(Fo2) + (0.0384P)2 + 0.1723P] where P = (Fo2 + 2Fc2)/3
wR(F2) = 0.075(Δ/σ)max < 0.001
S = 1.05Δρmax = 0.13 e Å3
1942 reflectionsΔρmin = −0.18 e Å3
140 parametersAbsolute structure: Flack parameter determined using 735 quotients [(I+)-(I-)]/[(I+)+(I-)] (Parsons et al., 2013)
0 restraintsAbsolute structure parameter: 0.16 (13)
Primary atom site location: structure-invariant direct methods
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
xyzUiso*/Ueq
C10.5506 (4)0.58330 (13)0.40422 (10)0.0189 (4)
C100.8197 (4)0.44386 (15)0.17647 (10)0.0251 (4)
C110.9543 (4)0.53953 (15)0.20052 (10)0.0242 (4)
C120.8830 (4)0.59306 (14)0.27456 (10)0.0219 (4)
C130.6741 (4)0.54803 (13)0.32367 (10)0.0196 (3)
C20.3367 (4)0.50126 (13)0.42679 (10)0.0194 (3)
C30.1613 (4)0.49391 (13)0.49503 (10)0.0209 (3)
C4−0.0178 (4)0.40413 (13)0.50050 (11)0.0228 (4)
C5−0.0177 (4)0.32387 (14)0.43891 (11)0.0246 (4)
C60.1590 (4)0.33133 (14)0.37017 (11)0.0235 (4)
C70.3353 (4)0.42037 (13)0.36414 (10)0.0195 (3)
C80.5403 (4)0.45037 (13)0.30001 (10)0.0198 (4)
C90.6112 (4)0.39797 (14)0.22607 (11)0.0239 (4)
H10.898 (6)0.773 (2)0.4668 (17)0.068 (9)*
H100.87030.40930.12560.030*
H111.09690.56890.16610.029*
H120.97500.65840.29080.026*
H30.16260.54850.53720.025*
H4−0.14080.39780.54670.027*
H5−0.13990.26310.44380.029*
H60.15830.27640.32830.028*
H90.52000.33250.20970.029*
N10.6059 (3)0.66488 (11)0.45230 (8)0.0202 (3)
O10.8178 (3)0.73127 (10)0.42014 (7)0.0233 (3)
U11U22U33U12U13U23
C10.0217 (9)0.0194 (8)0.0158 (7)0.0029 (6)−0.0016 (6)0.0013 (6)
C100.0300 (10)0.0290 (8)0.0164 (7)0.0078 (8)−0.0003 (7)−0.0031 (7)
C110.0257 (9)0.0289 (9)0.0179 (8)0.0060 (7)0.0018 (7)0.0038 (7)
C120.0266 (9)0.0206 (7)0.0186 (8)0.0025 (7)−0.0013 (7)0.0015 (6)
C130.0228 (9)0.0204 (7)0.0155 (7)0.0050 (7)−0.0024 (7)−0.0007 (6)
C20.0216 (8)0.0185 (7)0.0181 (8)0.0028 (7)−0.0048 (7)0.0005 (6)
C30.0233 (8)0.0219 (7)0.0174 (7)0.0043 (7)−0.0018 (7)0.0005 (6)
C40.0223 (8)0.0248 (8)0.0214 (8)0.0028 (6)0.0007 (8)0.0042 (7)
C50.0259 (9)0.0210 (8)0.0268 (9)−0.0024 (7)−0.0015 (7)0.0030 (7)
C60.0277 (10)0.0200 (7)0.0228 (8)0.0012 (7)−0.0040 (7)−0.0025 (6)
C70.0209 (8)0.0200 (7)0.0177 (7)0.0037 (6)−0.0021 (6)−0.0002 (6)
C80.0212 (9)0.0202 (7)0.0181 (8)0.0034 (7)−0.0032 (7)−0.0001 (6)
C90.0287 (10)0.0220 (8)0.0209 (8)0.0030 (7)−0.0039 (7)−0.0034 (6)
N10.0236 (8)0.0184 (6)0.0185 (7)0.0010 (6)−0.0008 (6)0.0014 (5)
O10.0283 (6)0.0217 (5)0.0198 (6)−0.0058 (5)0.0010 (5)−0.0023 (4)
C1—C131.484 (2)C4—H40.9500
C1—C21.481 (2)C5—C61.393 (2)
C10—C111.391 (3)C5—H50.9500
C10—H100.9500C6—C71.383 (2)
C11—C121.398 (2)C6—H60.9500
C11—H110.9500C7—C81.469 (2)
C12—C131.389 (2)C8—C131.408 (2)
C12—H120.9500C8—C91.389 (2)
C2—C71.410 (2)C9—C101.396 (3)
C2—C31.383 (2)C9—H90.9500
C3—C41.397 (2)N1—C11.288 (2)
C3—H30.9500O1—H10.98 (3)
C4—C51.392 (2)O1—N11.4000 (19)
N1—O1—H1107.7 (17)C6—C7—C2120.39 (16)
C1—N1—O1112.25 (13)C6—C7—C8130.96 (16)
N1—C1—C2121.43 (15)C9—C8—C7130.19 (16)
N1—C1—C13131.53 (16)C9—C8—C13120.61 (16)
C2—C1—C13107.00 (14)C13—C8—C7109.20 (14)
C3—C2—C1131.26 (15)C8—C9—H9120.8
C3—C2—C7120.97 (15)C8—C9—C10118.41 (16)
C7—C2—C1107.75 (14)C10—C9—H9120.8
C2—C3—H3120.8C9—C10—H10119.6
C2—C3—C4118.38 (15)C11—C10—C9120.89 (16)
C4—C3—H3120.8C11—C10—H10119.6
C3—C4—H4119.7C10—C11—H11119.5
C5—C4—C3120.63 (16)C10—C11—C12121.04 (17)
C5—C4—H4119.7C12—C11—H11119.5
C4—C5—H5119.5C11—C12—H12120.9
C4—C5—C6120.97 (17)C13—C12—C11118.17 (17)
C6—C5—H5119.5C13—C12—H12120.9
C5—C6—H6120.7C8—C13—C1107.38 (15)
C7—C6—C5118.66 (16)C12—C13—C1131.75 (16)
C7—C6—H6120.7C12—C13—C8120.87 (15)
C2—C7—C8108.64 (14)
O1—N1—C1—C2178.85 (14)C5—C6—C7—C20.5 (3)
O1—N1—C1—C131.2 (2)C5—C6—C7—C8−179.68 (17)
N1—C1—C2—C31.5 (3)C6—C7—C8—C91.3 (3)
N1—C1—C2—C7−177.14 (15)C6—C7—C8—C13−178.35 (18)
N1—C1—C13—C8177.82 (17)C7—C2—C3—C40.0 (2)
N1—C1—C13—C12−1.4 (3)C7—C8—C9—C10−178.93 (17)
C1—C2—C3—C4−178.52 (16)C7—C8—C13—C1−0.88 (18)
C1—C2—C7—C6178.38 (15)C7—C8—C13—C12178.46 (15)
C1—C2—C7—C8−1.52 (18)C8—C9—C10—C110.3 (3)
C2—C1—C13—C8−0.04 (18)C9—C8—C13—C1179.46 (15)
C2—C1—C13—C12−179.28 (17)C9—C8—C13—C12−1.2 (2)
C2—C3—C4—C50.4 (2)C9—C10—C11—C12−0.6 (3)
C2—C7—C8—C9−178.86 (18)C10—C11—C12—C130.1 (3)
C2—C7—C8—C131.53 (18)C11—C12—C13—C1179.97 (17)
C3—C2—C7—C6−0.5 (2)C11—C12—C13—C80.8 (2)
C3—C2—C7—C8179.64 (15)C13—C1—C2—C3179.66 (16)
C3—C4—C5—C6−0.4 (3)C13—C1—C2—C70.98 (18)
C4—C5—C6—C70.0 (3)C13—C8—C9—C100.6 (2)
D—H···AD—HH···AD···AD—H···A
C12—H12···O10.952.382.898 (2)114
O1—H1···N1i0.98 (3)1.80 (3)2.7758 (18)169 (3)
C5—H5···Cg1ii0.953.083.873142
Table 1

Hydrogen-bond geometry (Å, °)

Cg1 is the centroid of the C2–C7 ring.

D—H⋯A D—HH⋯A DA D—H⋯A
C12—H12⋯O10.952.382.898 (2)114
O1—H1⋯N1i 0.98 (3)1.80 (3)2.7758 (18)169 (3)
C5—H5⋯Cg1ii 0.953.083.873142

Symmetry codes: (i) ; (ii) .

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