| Literature DB >> 24764980 |
Bernhard Bugenhagen1, Yosef Al Jasem2, Mariam Al-Azani3, Thies Thiemann3.
Abstract
In the title mol-ecule, C13H9NO, the fluorene system and the oxime group non-H atoms are essentially coplanar, with a maximum deviation from the fluorene mean plane of 0.079 (2) Å for the oxime O atom. A short intra-molecular C-H⋯O generates an S(6) ring. In the crystal, mol-ecules related by a twofold screw axis are connected by O-H⋯N hydrogen bonds, forming [100] chains Within these chains, mol-ecules related by a unit translation along [100] show π-π stacking inter-actions between their fluorene ring systems with an inter-planar distance of 3.347 (2) Å. The dihedral angle between the fluorene units of adjacent mol-ecules along the helix is 88.40 (2)°. There is a short C-H⋯π contact between the fluorene groups belonging to neighbouring chains.Entities:
Year: 2014 PMID: 24764980 PMCID: PMC3998413 DOI: 10.1107/S1600536814002669
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C13H9NO | |
| Melting point = 471–472 K | |
| Orthorhombic, | Cu |
| Cell parameters from 3850 reflections | |
| θ = 4.5–76.1° | |
| µ = 0.70 mm−1 | |
| Block, colourless | |
| 0.16 × 0.13 × 0.13 mm |
| Agilent SuperNova (Dual, Cu at zero, Atlas) diffractometer | 1942 independent reflections |
| Radiation source: SuperNova (Cu) X-ray Source | 1865 reflections with |
| Mirror monochromator | |
| Detector resolution: 10.4127 pixels mm-1 | θmax = 76.3°, θmin = 4.6° |
| ω scans | |
| Absorption correction: multi-scan ( | |
| 7588 measured reflections |
| Refinement on | Hydrogen site location: difference Fourier map |
| Least-squares matrix: full | H atoms treated by a mixture of independent and constrained refinement |
| (Δ/σ)max < 0.001 | |
| Δρmax = 0.13 e Å−3 | |
| 1942 reflections | Δρmin = −0.18 e Å−3 |
| 140 parameters | Absolute structure: Flack parameter determined using 735 quotients
[( |
| 0 restraints | Absolute structure parameter: 0.16 (13) |
| Primary atom site location: structure-invariant direct methods |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| C1 | 0.5506 (4) | 0.58330 (13) | 0.40422 (10) | 0.0189 (4) | |
| C10 | 0.8197 (4) | 0.44386 (15) | 0.17647 (10) | 0.0251 (4) | |
| C11 | 0.9543 (4) | 0.53953 (15) | 0.20052 (10) | 0.0242 (4) | |
| C12 | 0.8830 (4) | 0.59306 (14) | 0.27456 (10) | 0.0219 (4) | |
| C13 | 0.6741 (4) | 0.54803 (13) | 0.32367 (10) | 0.0196 (3) | |
| C2 | 0.3367 (4) | 0.50126 (13) | 0.42679 (10) | 0.0194 (3) | |
| C3 | 0.1613 (4) | 0.49391 (13) | 0.49503 (10) | 0.0209 (3) | |
| C4 | −0.0178 (4) | 0.40413 (13) | 0.50050 (11) | 0.0228 (4) | |
| C5 | −0.0177 (4) | 0.32387 (14) | 0.43891 (11) | 0.0246 (4) | |
| C6 | 0.1590 (4) | 0.33133 (14) | 0.37017 (11) | 0.0235 (4) | |
| C7 | 0.3353 (4) | 0.42037 (13) | 0.36414 (10) | 0.0195 (3) | |
| C8 | 0.5403 (4) | 0.45037 (13) | 0.30001 (10) | 0.0198 (4) | |
| C9 | 0.6112 (4) | 0.39797 (14) | 0.22607 (11) | 0.0239 (4) | |
| H1 | 0.898 (6) | 0.773 (2) | 0.4668 (17) | 0.068 (9)* | |
| H10 | 0.8703 | 0.4093 | 0.1256 | 0.030* | |
| H11 | 1.0969 | 0.5689 | 0.1661 | 0.029* | |
| H12 | 0.9750 | 0.6584 | 0.2908 | 0.026* | |
| H3 | 0.1626 | 0.5485 | 0.5372 | 0.025* | |
| H4 | −0.1408 | 0.3978 | 0.5467 | 0.027* | |
| H5 | −0.1399 | 0.2631 | 0.4438 | 0.029* | |
| H6 | 0.1583 | 0.2764 | 0.3283 | 0.028* | |
| H9 | 0.5200 | 0.3325 | 0.2097 | 0.029* | |
| N1 | 0.6059 (3) | 0.66488 (11) | 0.45230 (8) | 0.0202 (3) | |
| O1 | 0.8178 (3) | 0.73127 (10) | 0.42014 (7) | 0.0233 (3) |
| C1 | 0.0217 (9) | 0.0194 (8) | 0.0158 (7) | 0.0029 (6) | −0.0016 (6) | 0.0013 (6) |
| C10 | 0.0300 (10) | 0.0290 (8) | 0.0164 (7) | 0.0078 (8) | −0.0003 (7) | −0.0031 (7) |
| C11 | 0.0257 (9) | 0.0289 (9) | 0.0179 (8) | 0.0060 (7) | 0.0018 (7) | 0.0038 (7) |
| C12 | 0.0266 (9) | 0.0206 (7) | 0.0186 (8) | 0.0025 (7) | −0.0013 (7) | 0.0015 (6) |
| C13 | 0.0228 (9) | 0.0204 (7) | 0.0155 (7) | 0.0050 (7) | −0.0024 (7) | −0.0007 (6) |
| C2 | 0.0216 (8) | 0.0185 (7) | 0.0181 (8) | 0.0028 (7) | −0.0048 (7) | 0.0005 (6) |
| C3 | 0.0233 (8) | 0.0219 (7) | 0.0174 (7) | 0.0043 (7) | −0.0018 (7) | 0.0005 (6) |
| C4 | 0.0223 (8) | 0.0248 (8) | 0.0214 (8) | 0.0028 (6) | 0.0007 (8) | 0.0042 (7) |
| C5 | 0.0259 (9) | 0.0210 (8) | 0.0268 (9) | −0.0024 (7) | −0.0015 (7) | 0.0030 (7) |
| C6 | 0.0277 (10) | 0.0200 (7) | 0.0228 (8) | 0.0012 (7) | −0.0040 (7) | −0.0025 (6) |
| C7 | 0.0209 (8) | 0.0200 (7) | 0.0177 (7) | 0.0037 (6) | −0.0021 (6) | −0.0002 (6) |
| C8 | 0.0212 (9) | 0.0202 (7) | 0.0181 (8) | 0.0034 (7) | −0.0032 (7) | −0.0001 (6) |
| C9 | 0.0287 (10) | 0.0220 (8) | 0.0209 (8) | 0.0030 (7) | −0.0039 (7) | −0.0034 (6) |
| N1 | 0.0236 (8) | 0.0184 (6) | 0.0185 (7) | 0.0010 (6) | −0.0008 (6) | 0.0014 (5) |
| O1 | 0.0283 (6) | 0.0217 (5) | 0.0198 (6) | −0.0058 (5) | 0.0010 (5) | −0.0023 (4) |
| C1—C13 | 1.484 (2) | C4—H4 | 0.9500 |
| C1—C2 | 1.481 (2) | C5—C6 | 1.393 (2) |
| C10—C11 | 1.391 (3) | C5—H5 | 0.9500 |
| C10—H10 | 0.9500 | C6—C7 | 1.383 (2) |
| C11—C12 | 1.398 (2) | C6—H6 | 0.9500 |
| C11—H11 | 0.9500 | C7—C8 | 1.469 (2) |
| C12—C13 | 1.389 (2) | C8—C13 | 1.408 (2) |
| C12—H12 | 0.9500 | C8—C9 | 1.389 (2) |
| C2—C7 | 1.410 (2) | C9—C10 | 1.396 (3) |
| C2—C3 | 1.383 (2) | C9—H9 | 0.9500 |
| C3—C4 | 1.397 (2) | N1—C1 | 1.288 (2) |
| C3—H3 | 0.9500 | O1—H1 | 0.98 (3) |
| C4—C5 | 1.392 (2) | O1—N1 | 1.4000 (19) |
| N1—O1—H1 | 107.7 (17) | C6—C7—C2 | 120.39 (16) |
| C1—N1—O1 | 112.25 (13) | C6—C7—C8 | 130.96 (16) |
| N1—C1—C2 | 121.43 (15) | C9—C8—C7 | 130.19 (16) |
| N1—C1—C13 | 131.53 (16) | C9—C8—C13 | 120.61 (16) |
| C2—C1—C13 | 107.00 (14) | C13—C8—C7 | 109.20 (14) |
| C3—C2—C1 | 131.26 (15) | C8—C9—H9 | 120.8 |
| C3—C2—C7 | 120.97 (15) | C8—C9—C10 | 118.41 (16) |
| C7—C2—C1 | 107.75 (14) | C10—C9—H9 | 120.8 |
| C2—C3—H3 | 120.8 | C9—C10—H10 | 119.6 |
| C2—C3—C4 | 118.38 (15) | C11—C10—C9 | 120.89 (16) |
| C4—C3—H3 | 120.8 | C11—C10—H10 | 119.6 |
| C3—C4—H4 | 119.7 | C10—C11—H11 | 119.5 |
| C5—C4—C3 | 120.63 (16) | C10—C11—C12 | 121.04 (17) |
| C5—C4—H4 | 119.7 | C12—C11—H11 | 119.5 |
| C4—C5—H5 | 119.5 | C11—C12—H12 | 120.9 |
| C4—C5—C6 | 120.97 (17) | C13—C12—C11 | 118.17 (17) |
| C6—C5—H5 | 119.5 | C13—C12—H12 | 120.9 |
| C5—C6—H6 | 120.7 | C8—C13—C1 | 107.38 (15) |
| C7—C6—C5 | 118.66 (16) | C12—C13—C1 | 131.75 (16) |
| C7—C6—H6 | 120.7 | C12—C13—C8 | 120.87 (15) |
| C2—C7—C8 | 108.64 (14) | ||
| O1—N1—C1—C2 | 178.85 (14) | C5—C6—C7—C2 | 0.5 (3) |
| O1—N1—C1—C13 | 1.2 (2) | C5—C6—C7—C8 | −179.68 (17) |
| N1—C1—C2—C3 | 1.5 (3) | C6—C7—C8—C9 | 1.3 (3) |
| N1—C1—C2—C7 | −177.14 (15) | C6—C7—C8—C13 | −178.35 (18) |
| N1—C1—C13—C8 | 177.82 (17) | C7—C2—C3—C4 | 0.0 (2) |
| N1—C1—C13—C12 | −1.4 (3) | C7—C8—C9—C10 | −178.93 (17) |
| C1—C2—C3—C4 | −178.52 (16) | C7—C8—C13—C1 | −0.88 (18) |
| C1—C2—C7—C6 | 178.38 (15) | C7—C8—C13—C12 | 178.46 (15) |
| C1—C2—C7—C8 | −1.52 (18) | C8—C9—C10—C11 | 0.3 (3) |
| C2—C1—C13—C8 | −0.04 (18) | C9—C8—C13—C1 | 179.46 (15) |
| C2—C1—C13—C12 | −179.28 (17) | C9—C8—C13—C12 | −1.2 (2) |
| C2—C3—C4—C5 | 0.4 (2) | C9—C10—C11—C12 | −0.6 (3) |
| C2—C7—C8—C9 | −178.86 (18) | C10—C11—C12—C13 | 0.1 (3) |
| C2—C7—C8—C13 | 1.53 (18) | C11—C12—C13—C1 | 179.97 (17) |
| C3—C2—C7—C6 | −0.5 (2) | C11—C12—C13—C8 | 0.8 (2) |
| C3—C2—C7—C8 | 179.64 (15) | C13—C1—C2—C3 | 179.66 (16) |
| C3—C4—C5—C6 | −0.4 (3) | C13—C1—C2—C7 | 0.98 (18) |
| C4—C5—C6—C7 | 0.0 (3) | C13—C8—C9—C10 | 0.6 (2) |
| H··· | ||||
| C12—H12···O1 | 0.95 | 2.38 | 2.898 (2) | 114 |
| O1—H1···N1i | 0.98 (3) | 1.80 (3) | 2.7758 (18) | 169 (3) |
| C5—H5··· | 0.95 | 3.08 | 3.873 | 142 |
Hydrogen-bond geometry (Å, °)
Cg1 is the centroid of the C2–C7 ring.
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| C12—H12⋯O1 | 0.95 | 2.38 | 2.898 (2) | 114 |
| O1—H1⋯N1i | 0.98 (3) | 1.80 (3) | 2.7758 (18) | 169 (3) |
| C5—H5⋯ | 0.95 | 3.08 | 3.873 | 142 |
Symmetry codes: (i) ; (ii) .