Literature DB >> 24764977

4-(Thio-phen-2-yl)-2-[4-(tri-fluoro-meth-yl)phen-yl]-2,3-di-hydro-1,5-benzo-thia-zepine.

B C Manjunath1, M Manjula1, K R Raghavendra2, K Ajay Kumar3, N K Lokanath1.   

Abstract

In the title compound, C20H14F3NS2, the seven-membered thia-zepine ring adopts a slightly distorted twist-boat conformation. The mean plane of the five-membered thio-phene ring fused to the thia-zepine ring is twisted by 32.3 (3) and 55.6 (4)° from the benzene and phenyl rings, respectively. In the crystal, inversion dimers linked by pairs of weak C-H⋯N inter-actions are observed.

Entities:  

Year:  2014        PMID: 24764977      PMCID: PMC3998467          DOI: 10.1107/S1600536814002529

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the biological activity of 1, 4-thia­zepines, see: Skiles et al. (1986 ▶); Zeng & Alper (2010 ▶). For a related structure, see: Manjula et al. (2013 ▶). For standard bond lengths, see: Allen et al. (1987 ▶).

Experimental

Crystal data

C20H14F3NS2 M = 389.46 Orthorhombic, a = 9.847 (2) Å b = 10.492 (3) Å c = 17.819 (4) Å V = 1841.0 (8) Å3 Z = 4 Cu Kα radiation μ = 2.92 mm−1 T = 296 K 0.20 × 0.19 × 0.18 mm

Data collection

Bruker X8 Proteum diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2013 ▶ T min = 0.593, T max = 0.622 12103 measured reflections 3028 independent reflections 2547 reflections with I > 2σ(I) R int = 0.056

Refinement

R[F 2 > 2σ(F 2)] = 0.085 wR(F 2) = 0.239 S = 1.03 3028 reflections 237 parameters H-atom parameters constrained Δρmax = 0.94 e Å−3 Δρmin = −0.51 e Å−3 Absolute structure: Flack (1983 ▶), 1270 Friedel pairs Absolute structure parameter: 0.0 (3) Data collection: APEX2 (Bruker, 2013 ▶); cell refinement: SAINT (Bruker, 2013 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: Mercury (Macrae et al., 2006 ▶); software used to prepare material for publication: Mercury. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536814002529/jj2182sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536814002529/jj2182Isup2.hkl Click here for additional data file. Supporting information file. DOI: 10.1107/S1600536814002529/jj2182Isup3.cml CCDC reference: Additional supporting information: crystallographic information; 3D view; checkCIF report
C20H14F3NS2F(000) = 800
Mr = 389.46Dx = 1.405 Mg m3
Orthorhombic, P212121Cu Kα radiation, λ = 1.54178 Å
Hall symbol: P 2ac 2abCell parameters from 12103 reflections
a = 9.847 (2) Åθ = 4.9–64.8°
b = 10.492 (3) ŵ = 2.92 mm1
c = 17.819 (4) ÅT = 296 K
V = 1841.0 (8) Å3Needle, light yellow
Z = 40.20 × 0.19 × 0.18 mm
Bruker X8 Proteum diffractometer3028 independent reflections
Radiation source: Bruker MicroStar microfocus rotating anode2547 reflections with I > 2σ(I)
Helios multilayer optics monochromatorRint = 0.056
Detector resolution: 10.7 pixels mm-1θmax = 64.8°, θmin = 4.9°
φ and ω scansh = −11→11
Absorption correction: multi-scan (SADABS; Bruker, 2013k = −8→12
Tmin = 0.593, Tmax = 0.622l = −20→20
12103 measured reflections
Refinement on F2Hydrogen site location: inferred from neighbouring sites
Least-squares matrix: fullH-atom parameters constrained
R[F2 > 2σ(F2)] = 0.085w = 1/[σ2(Fo2) + (0.1979P)2] where P = (Fo2 + 2Fc2)/3
wR(F2) = 0.239(Δ/σ)max < 0.001
S = 1.03Δρmax = 0.94 e Å3
3028 reflectionsΔρmin = −0.51 e Å3
237 parametersExtinction correction: SHELXL, FC*=KFC[1+0.001XFC2Λ3/SIN(2Θ)]-1/4
0 restraintsExtinction coefficient: 0.017 (3)
Primary atom site location: structure-invariant direct methodsAbsolute structure: Flack (1983), 1270 Friedel pairs
Secondary atom site location: difference Fourier mapAbsolute structure parameter: 0.0 (3)
Experimental. m.p. 405 K, 1H NMR (CDCl3): δ 2.0 (d, 2H, C3—H), 3.80 (t, 1H, C2—H), 7.24 (dd, 2H, Ar—H), 7.58 (dd, 2H, Ar—H), 7.18 (t, 1H, C4—H 5 m ring), 7.46 (d, 1H, C3—H 5 m ring), 7.72 (d, 1H, C5—H 5 m ring), 7.32–7.46 (m, 4H, Ar—H). Anal. Calcd. for C20H14F3NS2: C 62.14, H 3.56, N 3.58°; Found C 61.68, H 3.62, N 3.60°. Mass FAB+ (NBA): 390 (M + 1, 100°).
Geometry. Bond distances, angles etc. have been calculated using the rounded fractional coordinates. All su's are estimated from the variances of the (full) variance-covariance matrix. The cell e.s.d.'s are taken into account in the estimation of distances, angles and torsion angles
Refinement. Refinement on F2 for ALL reflections except those flagged by the user for potential systematic errors. Weighted R-factors wR and all goodnesses of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The observed criterion of F2 > σ(F2) is used only for calculating -R-factor-obs etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R-factors based on ALL data will be even larger.
xyzUiso*/Ueq
S10.3240 (2)0.99443 (19)0.41340 (10)0.0841 (7)
S9−0.00510 (15)0.88544 (12)0.20297 (9)0.0608 (5)
F240.2469 (9)0.4640 (10)−0.1093 (6)0.257 (6)
F250.0847 (19)0.5559 (8)−0.1388 (4)0.289 (10)
F260.0674 (7)0.3951 (6)−0.0787 (3)0.139 (3)
N120.1053 (5)0.8288 (4)0.3632 (3)0.0550 (16)
C20.4905 (8)1.0319 (9)0.4023 (6)0.104 (4)
C30.5488 (8)0.9699 (9)0.3449 (7)0.101 (4)
C40.4592 (6)0.8887 (6)0.3089 (4)0.0650 (19)
C50.3308 (5)0.8882 (5)0.3403 (3)0.0533 (17)
C60.2105 (5)0.8181 (5)0.3202 (3)0.0500 (16)
C70.2105 (5)0.7370 (5)0.2509 (3)0.0477 (16)
C80.1595 (5)0.8108 (4)0.1818 (3)0.0510 (16)
C10−0.0758 (6)0.7848 (5)0.2719 (3)0.0523 (16)
C11−0.0168 (5)0.7715 (5)0.3428 (3)0.0517 (14)
C13−0.2004 (6)0.7269 (6)0.2580 (4)0.0680 (19)
C14−0.2705 (6)0.6610 (6)0.3132 (5)0.071 (2)
C15−0.2116 (7)0.6511 (6)0.3834 (5)0.073 (2)
C16−0.0877 (7)0.7058 (6)0.3996 (4)0.0653 (19)
C170.1511 (5)0.7293 (4)0.1124 (3)0.0447 (12)
C180.2330 (6)0.7568 (5)0.0509 (3)0.0503 (16)
C190.2279 (6)0.6822 (5)−0.0137 (3)0.0557 (17)
C200.1419 (5)0.5784 (5)−0.0162 (3)0.0493 (16)
C210.0616 (6)0.5477 (5)0.0452 (3)0.0580 (17)
C220.0667 (6)0.6223 (5)0.1088 (3)0.0580 (17)
C230.1334 (7)0.4983 (7)−0.0842 (3)0.071 (2)
H20.536401.089500.432800.1250*
H30.639200.980200.331000.1210*
H40.483100.839400.267600.0780*
H7A0.152800.663400.259100.0570*
H7B0.301900.706600.241500.0570*
H80.224700.879400.171800.0610*
H13−0.237800.732600.210200.0820*
H14−0.354700.624400.303300.0850*
H15−0.256900.606200.420800.0880*
H16−0.051200.699500.447600.0790*
H180.292000.825900.053000.0600*
H190.281900.70230−0.054900.0660*
H210.004500.477200.043400.0700*
H220.013200.601200.149900.0700*
U11U22U33U12U13U23
S10.0843 (11)0.0942 (13)0.0738 (11)−0.0174 (9)−0.0048 (8)−0.0297 (9)
S90.0687 (9)0.0503 (7)0.0634 (9)0.0168 (6)0.0018 (7)0.0040 (5)
F240.190 (8)0.307 (12)0.275 (12)−0.134 (8)0.144 (8)−0.238 (11)
F250.64 (3)0.152 (6)0.076 (4)0.034 (12)−0.127 (9)−0.021 (4)
F260.200 (7)0.123 (4)0.093 (4)−0.086 (4)0.037 (4)−0.050 (3)
N120.063 (3)0.050 (2)0.052 (3)−0.002 (2)0.010 (2)−0.0088 (18)
C20.073 (4)0.106 (6)0.133 (8)−0.017 (4)−0.026 (5)−0.019 (6)
C30.067 (4)0.104 (6)0.132 (8)−0.018 (4)0.003 (5)−0.001 (6)
C40.051 (3)0.070 (3)0.074 (4)−0.003 (2)0.011 (3)0.004 (3)
C50.053 (3)0.050 (3)0.057 (3)0.004 (2)−0.001 (2)0.003 (2)
C60.054 (3)0.046 (2)0.050 (3)0.008 (2)0.005 (2)0.002 (2)
C70.055 (3)0.042 (2)0.046 (3)0.004 (2)0.004 (2)−0.005 (2)
C80.064 (3)0.045 (2)0.044 (3)0.004 (2)0.001 (2)−0.0035 (19)
C100.057 (3)0.040 (2)0.060 (3)0.008 (2)0.000 (2)−0.005 (2)
C110.050 (2)0.050 (2)0.055 (3)−0.002 (2)0.012 (2)−0.010 (2)
C130.049 (3)0.067 (3)0.088 (4)0.005 (3)−0.008 (3)−0.008 (3)
C140.054 (3)0.064 (3)0.095 (5)−0.010 (3)0.002 (3)−0.002 (3)
C150.063 (3)0.067 (4)0.089 (5)−0.005 (3)0.017 (4)0.003 (3)
C160.075 (4)0.064 (3)0.057 (3)−0.007 (3)0.018 (3)−0.001 (3)
C170.052 (2)0.039 (2)0.043 (2)−0.0020 (19)0.0043 (19)0.0005 (19)
C180.057 (3)0.045 (2)0.049 (3)−0.007 (2)0.004 (2)0.005 (2)
C190.061 (3)0.057 (3)0.049 (3)−0.014 (2)0.008 (2)0.000 (2)
C200.053 (3)0.049 (2)0.046 (3)−0.004 (2)0.005 (2)0.000 (2)
C210.066 (3)0.055 (3)0.053 (3)−0.009 (2)0.010 (3)−0.003 (2)
C220.067 (3)0.053 (3)0.054 (3)−0.016 (2)0.014 (2)−0.005 (2)
C230.087 (4)0.080 (4)0.047 (3)−0.026 (4)0.018 (3)−0.012 (3)
S1—C21.698 (8)C17—C181.391 (8)
S1—C51.716 (6)C17—C221.398 (7)
S9—C81.839 (5)C18—C191.393 (8)
S9—C101.763 (6)C19—C201.380 (8)
F24—C231.256 (11)C20—C211.388 (8)
F25—C231.242 (12)C20—C231.477 (8)
F26—C231.267 (10)C21—C221.378 (8)
N12—C61.293 (7)C2—H20.9300
N12—C111.393 (7)C3—H30.9300
C2—C31.341 (15)C4—H40.9300
C3—C41.384 (12)C7—H7A0.9700
C4—C51.383 (8)C7—H7B0.9700
C5—C61.440 (7)C8—H80.9800
C6—C71.500 (8)C13—H130.9300
C7—C81.539 (7)C14—H140.9300
C8—C171.506 (7)C15—H150.9300
C10—C111.398 (8)C16—H160.9300
C10—C131.391 (8)C18—H180.9300
C11—C161.410 (9)C19—H190.9300
C13—C141.386 (10)C21—H210.9300
C14—C151.383 (12)C22—H220.9300
C15—C161.379 (10)
C2—S1—C591.4 (4)F24—C23—F25101.8 (10)
C8—S9—C10103.6 (2)F24—C23—F26103.8 (8)
C6—N12—C11120.0 (5)F24—C23—C20113.9 (7)
S1—C2—C3113.0 (7)F25—C23—F26106.2 (8)
C2—C3—C4112.3 (7)F25—C23—C20112.8 (7)
C3—C4—C5113.4 (7)F26—C23—C20116.9 (5)
S1—C5—C4109.9 (4)S1—C2—H2123.00
S1—C5—C6119.3 (4)C3—C2—H2124.00
C4—C5—C6130.8 (5)C2—C3—H3124.00
N12—C6—C5117.9 (5)C4—C3—H3124.00
N12—C6—C7122.5 (5)C3—C4—H4123.00
C5—C6—C7119.7 (4)C5—C4—H4123.00
C6—C7—C8111.9 (4)C6—C7—H7A109.00
S9—C8—C7109.7 (4)C6—C7—H7B109.00
S9—C8—C17111.2 (3)C8—C7—H7A109.00
C7—C8—C17112.9 (4)C8—C7—H7B109.00
S9—C10—C11121.7 (4)H7A—C7—H7B108.00
S9—C10—C13119.1 (5)S9—C8—H8108.00
C11—C10—C13118.9 (5)C7—C8—H8108.00
N12—C11—C10123.5 (5)C17—C8—H8108.00
N12—C11—C16116.8 (5)C10—C13—H13119.00
C10—C11—C16119.5 (5)C14—C13—H13119.00
C10—C13—C14122.0 (6)C13—C14—H14121.00
C13—C14—C15118.1 (6)C15—C14—H14121.00
C14—C15—C16122.0 (7)C14—C15—H15119.00
C11—C16—C15119.4 (7)C16—C15—H15119.00
C8—C17—C18119.8 (4)C11—C16—H16120.00
C8—C17—C22121.8 (5)C15—C16—H16120.00
C18—C17—C22118.4 (5)C17—C18—H18119.00
C17—C18—C19120.9 (5)C19—C18—H18120.00
C18—C19—C20119.5 (5)C18—C19—H19120.00
C19—C20—C21120.5 (5)C20—C19—H19120.00
C19—C20—C23120.7 (5)C20—C21—H21120.00
C21—C20—C23118.8 (5)C22—C21—H21120.00
C20—C21—C22119.7 (5)C17—C22—H22119.00
C17—C22—C21121.0 (5)C21—C22—H22119.00
C5—S1—C2—C31.5 (8)S9—C10—C11—C16170.3 (4)
C2—S1—C5—C4−1.9 (5)C13—C10—C11—N12−177.9 (5)
C2—S1—C5—C6179.5 (5)S9—C10—C13—C14−171.0 (5)
C10—S9—C8—C7−27.7 (4)C11—C10—C13—C142.8 (9)
C10—S9—C8—C1797.9 (4)C13—C10—C11—C16−3.3 (8)
C8—S9—C10—C1165.2 (5)S9—C10—C11—N12−4.3 (8)
C8—S9—C10—C13−121.2 (5)N12—C11—C16—C15177.7 (5)
C6—N12—C11—C16135.8 (6)C10—C11—C16—C152.7 (9)
C11—N12—C6—C5174.6 (5)C10—C13—C14—C15−1.5 (10)
C11—N12—C6—C7−4.9 (8)C13—C14—C15—C160.8 (10)
C6—N12—C11—C10−49.5 (7)C14—C15—C16—C11−1.5 (10)
S1—C2—C3—C4−0.7 (11)C8—C17—C18—C19179.5 (5)
C2—C3—C4—C5−0.7 (11)C22—C17—C18—C192.1 (8)
C3—C4—C5—S11.8 (8)C8—C17—C22—C21−179.1 (5)
C3—C4—C5—C6−179.8 (7)C18—C17—C22—C21−1.8 (8)
S1—C5—C6—N12−6.9 (7)C17—C18—C19—C20−1.0 (8)
C4—C5—C6—N12174.9 (6)C18—C19—C20—C21−0.4 (8)
C4—C5—C6—C7−5.6 (9)C18—C19—C20—C23179.4 (5)
S1—C5—C6—C7172.7 (4)C19—C20—C21—C220.7 (8)
N12—C6—C7—C887.7 (6)C23—C20—C21—C22−179.1 (5)
C5—C6—C7—C8−91.8 (6)C19—C20—C23—F2449.1 (9)
C6—C7—C8—C17−176.8 (4)C19—C20—C23—F25−66.2 (11)
C6—C7—C8—S9−52.1 (5)C19—C20—C23—F26170.3 (6)
C7—C8—C17—C18−116.1 (5)C21—C20—C23—F24−131.0 (8)
S9—C8—C17—C18120.0 (5)C21—C20—C23—F25113.6 (11)
S9—C8—C17—C22−62.8 (5)C21—C20—C23—F26−9.9 (9)
C7—C8—C17—C2261.1 (6)C20—C21—C22—C170.4 (8)
D—H···AD—HH···AD···AD—H···A
C21—H21···N12i0.932.523.262 (7)137
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
C21—H21⋯N12i 0.932.523.262 (7)137

Symmetry code: (i) .

  3 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Palladium-catalyzed domino ring-opening/carboxamidation reactions of N-tosyl aziridines and 2-iodothiophenols: a facile and efficient approach to 1,4-benzothiazepin-5-ones.

Authors:  Fanlong Zeng; Howard Alper
Journal:  Org Lett       Date:  2010-11-04       Impact factor: 6.005

3.  2-(4-Fluoro-phen-yl)-4-(thio-phen-2-yl)-2,3-di-hydro-1,5-benzothia-zepine.

Authors:  M Manjula; B C Manjunath; N Renuka; K Ajay Kumar; N K Lokanath
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-10-05
  3 in total

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