Literature DB >> 24764954

Bis(1-benzyl-1H-benzimidazole-κN (3))di-chlorido-zinc.

Rachid Bouhfid1, El Mokhtar Essassi2, Mohamed Saadi3, Lahcen El Ammari3.   

Abstract

In the title compound, [ZnCl2(C14H12N2)2], the Zn(II) atom exhibits a distorted tetra-hedral coordination geometry involving two chloride anions and two N-atom donors from 1-benzyl-1H-benzimidazole ligands. In both ligands, the benzyl and benzimidazole rings are nearly perpendicular [dihedral angles = 81.7 (2) and 81.5 (2)°]. The two benzimidazole systems are essentially planar [maximum deviations = 0.015 (3) and 0.020 (2) Å] and form a dihedral angle of 78.09 (8)°. In the crystal, centrosymmetrically related mol-ecules are linked by pairs of C-H⋯Cl hydrogen bonds into chains parallel to the a axis.

Entities:  

Year:  2014        PMID: 24764954      PMCID: PMC3998485          DOI: 10.1107/S1600536814002840

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to the biochemical properties of benzimidazole derivatives, see: Mann et al. (2001 ▶); Naithani et al. (1990 ▶); Goudgaon et al. (2004 ▶). For the structures of related compounds see: Abdel-Ghani & Mansour (2011 ▶, 2012 ▶); Ahuja & Prasad (1976 ▶).

Experimental

Crystal data

[ZnCl2(C14H12N2)2] M = 552.78 Triclinic, a = 9.9819 (4) Å b = 10.0564 (4) Å c = 13.6641 (6) Å α = 99.539 (2)° β = 92.087 (2)° γ = 99.122 (2)° V = 1332.79 (10) Å3 Z = 2 Mo Kα radiation μ = 1.15 mm−1 T = 296 K 0.37 × 0.32 × 0.26 mm

Data collection

Bruker X8 APEX diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2009 ▶) T min = 0.682, T max = 0.840 30968 measured reflections 7403 independent reflections 5928 reflections with I > 2σ(I) R int = 0.026

Refinement

R[F 2 > 2σ(F 2)] = 0.039 wR(F 2) = 0.108 S = 1.06 7403 reflections 318 parameters H-atom parameters constrained Δρmax = 0.58 e Å−3 Δρmin = −0.24 e Å−3 Data collection: APEX2 (Bruker, 2009 ▶); cell refinement: SAINT (Bruker, 2009 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012 ▶); software used to prepare material for publication: PLATON (Spek, 2009 ▶) and publCIF (Westrip, 2010 ▶). Crystal structure: contains datablock(s) I. DOI: 10.1107/S1600536814002840/rz5104sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536814002840/rz5104Isup2.hkl CCDC reference: Additional supporting information: crystallographic information; 3D view; checkCIF report
[ZnCl2(C14H12N2)2]V = 1332.79 (10) Å3
Mr = 552.78Z = 2
Triclinic, P1F(000) = 568
Hall symbol: -p 1Dx = 1.377 Mg m3
a = 9.9819 (4) ÅMo Kα radiation, λ = 0.71073 Å
b = 10.0564 (4) ŵ = 1.15 mm1
c = 13.6641 (6) ÅT = 296 K
α = 99.539 (2)°Block, colourless
β = 92.087 (2)°0.37 × 0.32 × 0.26 mm
γ = 99.122 (2)°
Bruker X8 APEX diffractometer7403 independent reflections
Radiation source: fine-focus sealed tube5928 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.026
φ and ω scansθmax = 29.6°, θmin = 2.4°
Absorption correction: multi-scan (SADABS; Bruker, 2009)h = −13→13
Tmin = 0.682, Tmax = 0.840k = −13→13
30968 measured reflectionsl = −18→18
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.039Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.108H-atom parameters constrained
S = 1.06w = 1/[σ2(Fo2) + (0.0551P)2 + 0.3641P] where P = (Fo2 + 2Fc2)/3
7403 reflections(Δ/σ)max < 0.001
318 parametersΔρmax = 0.58 e Å3
0 restraintsΔρmin = −0.24 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against all reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on all data will be even larger.
xyzUiso*/Ueq
C10.7633 (4)0.8525 (3)0.4366 (3)0.1008 (11)
H10.77910.93010.40720.121*
C20.8206 (5)0.8556 (4)0.5311 (3)0.1210 (14)
H20.87540.93500.56410.145*
C30.7979 (4)0.7450 (5)0.5757 (2)0.1088 (13)
H30.83790.74770.63870.131*
C40.7162 (4)0.6296 (4)0.5281 (3)0.1052 (12)
H40.69850.55370.55930.126*
C50.6591 (4)0.6246 (3)0.4331 (2)0.0826 (8)
H50.60360.54510.40100.099*
C60.6835 (2)0.7356 (2)0.38635 (17)0.0602 (5)
C70.6298 (3)0.7325 (3)0.28114 (18)0.0675 (6)
H7A0.61990.82470.27330.085 (9)*
H7B0.69620.70310.23590.084 (9)*
C80.3754 (2)0.6587 (2)0.29074 (15)0.0539 (5)
C90.3381 (3)0.7496 (3)0.36933 (17)0.0692 (6)
H90.40180.81810.40710.083*
C100.2033 (4)0.7334 (3)0.3883 (2)0.0799 (8)
H100.17540.79140.44110.096*
C110.1069 (3)0.6330 (3)0.3312 (2)0.0775 (7)
H110.01630.62550.34650.093*
C120.1428 (3)0.5448 (3)0.25247 (19)0.0644 (6)
H120.07800.47840.21380.077*
C130.2792 (2)0.5583 (2)0.23266 (15)0.0510 (4)
C140.4755 (2)0.5385 (2)0.17551 (15)0.0538 (5)
H140.54320.50850.13690.065*
C15−0.2428 (3)0.2655 (3)0.2558 (2)0.0821 (8)
H15−0.16170.31810.24370.099*
C16−0.2920 (5)0.2837 (4)0.3495 (2)0.1078 (12)
H16−0.24210.34580.40100.129*
C17−0.4137 (4)0.2106 (5)0.3665 (2)0.1047 (13)
H17−0.44920.22710.42850.126*
C18−0.4834 (3)0.1131 (4)0.2925 (2)0.0917 (10)
H18−0.56480.06130.30490.110*
C19−0.4329 (2)0.0915 (3)0.19898 (18)0.0638 (6)
H19−0.47970.02430.14900.077*
C20−0.3139 (2)0.1694 (2)0.18024 (15)0.0487 (4)
C21−0.26224 (18)0.1483 (2)0.07709 (15)0.0491 (4)
H21A−0.30580.06000.04070.059*
H21B−0.28620.21820.04180.059*
C22−0.04380 (18)0.06922 (18)0.12376 (13)0.0409 (4)
C23−0.0871 (2)−0.0469 (2)0.16412 (17)0.0570 (5)
H23−0.1788−0.08020.16780.068*
C240.0132 (3)−0.1098 (2)0.1982 (2)0.0688 (6)
H24−0.0113−0.18780.22610.083*
C250.1510 (3)−0.0600 (2)0.19231 (18)0.0638 (6)
H250.2157−0.10560.21660.077*
C260.1940 (2)0.0551 (2)0.15140 (15)0.0510 (4)
H260.28580.08780.14720.061*
C270.09351 (18)0.11926 (18)0.11694 (12)0.0393 (3)
C28−0.02314 (18)0.24853 (19)0.05074 (14)0.0447 (4)
H28−0.04610.31760.01910.054*
N10.49942 (19)0.6426 (2)0.25291 (13)0.0562 (4)
N20.34613 (17)0.48349 (18)0.16007 (13)0.0515 (4)
N30.10356 (15)0.23339 (16)0.07047 (12)0.0443 (3)
N4−0.11488 (15)0.15456 (16)0.08096 (12)0.0425 (3)
Zn10.26873 (2)0.35268 (2)0.034848 (16)0.04370 (8)
Cl10.18906 (5)0.46699 (5)−0.07679 (4)0.05779 (14)
Cl20.43183 (5)0.23659 (6)−0.01957 (4)0.05514 (13)
U11U22U33U12U13U23
C10.128 (3)0.0754 (18)0.082 (2)−0.0178 (19)−0.027 (2)0.0067 (16)
C20.147 (4)0.105 (3)0.085 (2)−0.009 (2)−0.049 (2)−0.015 (2)
C30.131 (3)0.130 (3)0.0621 (17)0.044 (3)−0.0313 (19)−0.005 (2)
C40.139 (3)0.101 (2)0.081 (2)0.032 (2)−0.024 (2)0.0289 (19)
C50.105 (2)0.0691 (16)0.0702 (16)0.0086 (15)−0.0213 (15)0.0133 (13)
C60.0603 (13)0.0638 (13)0.0514 (11)0.0031 (10)−0.0037 (10)0.0035 (10)
C70.0673 (14)0.0725 (15)0.0551 (12)−0.0147 (12)−0.0033 (11)0.0164 (11)
C80.0656 (13)0.0573 (11)0.0423 (10)0.0116 (10)−0.0011 (9)0.0186 (8)
C90.0940 (19)0.0659 (14)0.0497 (12)0.0184 (13)−0.0031 (12)0.0124 (10)
C100.107 (2)0.0841 (18)0.0608 (14)0.0472 (17)0.0141 (15)0.0157 (13)
C110.0728 (16)0.094 (2)0.0791 (17)0.0406 (15)0.0165 (14)0.0269 (15)
C120.0562 (12)0.0737 (15)0.0688 (14)0.0189 (11)0.0059 (11)0.0198 (12)
C130.0550 (11)0.0539 (11)0.0479 (10)0.0116 (9)0.0019 (8)0.0177 (8)
C140.0516 (11)0.0620 (12)0.0454 (10)−0.0021 (9)0.0040 (8)0.0136 (9)
C150.090 (2)0.0796 (18)0.0657 (15)−0.0004 (15)0.0121 (14)−0.0051 (13)
C160.128 (3)0.124 (3)0.0638 (18)0.033 (3)0.0048 (19)−0.0162 (18)
C170.099 (2)0.178 (4)0.0517 (15)0.064 (3)0.0180 (16)0.0198 (19)
C180.0571 (15)0.161 (3)0.0696 (17)0.0273 (18)0.0195 (13)0.045 (2)
C190.0406 (10)0.0944 (17)0.0597 (12)0.0133 (11)0.0059 (9)0.0199 (12)
C200.0455 (10)0.0543 (11)0.0502 (10)0.0158 (8)0.0057 (8)0.0124 (8)
C210.0338 (8)0.0610 (11)0.0525 (10)0.0051 (8)0.0037 (7)0.0129 (9)
C220.0399 (8)0.0422 (9)0.0400 (8)0.0031 (7)−0.0006 (7)0.0099 (7)
C230.0510 (11)0.0547 (11)0.0668 (13)−0.0035 (9)0.0029 (9)0.0267 (10)
C240.0727 (15)0.0575 (13)0.0822 (16)0.0032 (11)−0.0030 (12)0.0387 (12)
C250.0673 (14)0.0640 (13)0.0676 (14)0.0189 (11)−0.0075 (11)0.0279 (11)
C260.0440 (10)0.0595 (11)0.0519 (10)0.0106 (8)−0.0034 (8)0.0160 (9)
C270.0400 (8)0.0402 (8)0.0375 (8)0.0043 (7)−0.0002 (6)0.0092 (7)
C280.0408 (9)0.0429 (9)0.0539 (10)0.0070 (7)0.0038 (8)0.0182 (8)
N10.0570 (10)0.0648 (11)0.0434 (8)−0.0043 (8)−0.0011 (7)0.0144 (8)
N20.0464 (9)0.0572 (10)0.0502 (9)0.0023 (7)0.0031 (7)0.0129 (7)
N30.0377 (7)0.0442 (8)0.0539 (9)0.0042 (6)0.0031 (6)0.0189 (7)
N40.0359 (7)0.0451 (8)0.0479 (8)0.0051 (6)0.0031 (6)0.0140 (6)
Zn10.03618 (11)0.04504 (13)0.05179 (14)0.00320 (8)0.00320 (8)0.01722 (9)
Cl10.0506 (3)0.0594 (3)0.0722 (3)0.0134 (2)0.0037 (2)0.0330 (3)
Cl20.0428 (2)0.0630 (3)0.0643 (3)0.0156 (2)0.0044 (2)0.0178 (2)
C1—C61.373 (4)C15—H150.9300
C1—C21.386 (5)C16—C171.365 (6)
C1—H10.9300C16—H160.9300
C2—C31.347 (6)C17—C181.368 (5)
C2—H20.9300C17—H170.9300
C3—C41.359 (5)C18—C191.387 (4)
C3—H30.9300C18—H180.9300
C4—C51.388 (4)C19—C201.372 (3)
C4—H40.9300C19—H190.9300
C5—C61.370 (4)C20—C211.512 (3)
C5—H50.9300C21—N41.461 (2)
C6—C71.509 (3)C21—H21A0.9700
C7—N11.461 (3)C21—H21B0.9700
C7—H7A0.9700C22—N41.382 (2)
C7—H7B0.9700C22—C231.387 (3)
C8—N11.381 (3)C22—C271.395 (2)
C8—C91.393 (3)C23—C241.372 (3)
C8—C131.394 (3)C23—H230.9300
C9—C101.369 (4)C24—C251.398 (4)
C9—H90.9300C24—H240.9300
C10—C111.389 (4)C25—C261.382 (3)
C10—H100.9300C25—H250.9300
C11—C121.373 (4)C26—C271.384 (3)
C11—H110.9300C26—H260.9300
C12—C131.387 (3)C27—N31.393 (2)
C12—H120.9300C28—N31.321 (2)
C13—N21.398 (3)C28—N41.336 (2)
C14—N21.316 (3)C28—H280.9300
C14—N11.344 (3)N2—Zn12.0225 (17)
C14—H140.9300N3—Zn12.0048 (15)
C15—C201.380 (3)Zn1—Cl22.2292 (5)
C15—C161.382 (4)Zn1—Cl12.2503 (5)
C6—C1—C2120.4 (3)C17—C18—C19120.1 (3)
C6—C1—H1119.8C17—C18—H18120.0
C2—C1—H1119.8C19—C18—H18120.0
C3—C2—C1120.9 (3)C20—C19—C18120.0 (3)
C3—C2—H2119.6C20—C19—H19120.0
C1—C2—H2119.6C18—C19—H19120.0
C2—C3—C4119.6 (3)C19—C20—C15119.6 (2)
C2—C3—H3120.2C19—C20—C21119.6 (2)
C4—C3—H3120.2C15—C20—C21120.8 (2)
C3—C4—C5120.2 (3)N4—C21—C20111.42 (16)
C3—C4—H4119.9N4—C21—H21A109.3
C5—C4—H4119.9C20—C21—H21A109.3
C6—C5—C4120.7 (3)N4—C21—H21B109.3
C6—C5—H5119.6C20—C21—H21B109.3
C4—C5—H5119.6H21A—C21—H21B108.0
C5—C6—C1118.3 (3)N4—C22—C23131.75 (17)
C5—C6—C7122.6 (2)N4—C22—C27105.86 (15)
C1—C6—C7119.2 (2)C23—C22—C27122.35 (17)
N1—C7—C6114.19 (19)C24—C23—C22116.2 (2)
N1—C7—H7A108.7C24—C23—H23121.9
C6—C7—H7A108.7C22—C23—H23121.9
N1—C7—H7B108.7C23—C24—C25121.9 (2)
C6—C7—H7B108.7C23—C24—H24119.0
H7A—C7—H7B107.6C25—C24—H24119.0
N1—C8—C9132.6 (2)C26—C25—C24121.8 (2)
N1—C8—C13106.03 (19)C26—C25—H25119.1
C9—C8—C13121.4 (2)C24—C25—H25119.1
C10—C9—C8116.9 (3)C25—C26—C27116.63 (19)
C10—C9—H9121.6C25—C26—H26121.7
C8—C9—H9121.6C27—C26—H26121.7
C9—C10—C11122.0 (3)C26—C27—N3130.31 (17)
C9—C10—H10119.0C26—C27—C22121.08 (17)
C11—C10—H10119.0N3—C27—C22108.59 (15)
C12—C11—C10121.3 (3)N3—C28—N4113.13 (16)
C12—C11—H11119.4N3—C28—H28123.4
C10—C11—H11119.4N4—C28—H28123.4
C11—C12—C13117.7 (3)C14—N1—C8107.04 (18)
C11—C12—H12121.2C14—N1—C7125.4 (2)
C13—C12—H12121.2C8—N1—C7127.1 (2)
C12—C13—C8120.7 (2)C14—N2—C13105.48 (18)
C12—C13—N2130.8 (2)C14—N2—Zn1123.26 (15)
C8—C13—N2108.46 (19)C13—N2—Zn1129.57 (14)
N2—C14—N1113.0 (2)C28—N3—C27105.30 (14)
N2—C14—H14123.5C28—N3—Zn1124.79 (12)
N1—C14—H14123.5C27—N3—Zn1129.89 (12)
C20—C15—C16120.0 (3)C28—N4—C22107.12 (15)
C20—C15—H15120.0C28—N4—C21126.89 (16)
C16—C15—H15120.0C22—N4—C21125.84 (15)
C17—C16—C15120.2 (3)N3—Zn1—N2107.29 (7)
C17—C16—H16119.9N3—Zn1—Cl2113.31 (5)
C15—C16—H16119.9N2—Zn1—Cl2107.21 (5)
C16—C17—C18120.1 (3)N3—Zn1—Cl1104.56 (5)
C16—C17—H17119.9N2—Zn1—Cl1110.42 (5)
C18—C17—H17119.9Cl2—Zn1—Cl1113.88 (2)
D—H···AD—HH···AD···AD—H···A
C14—H14···Cl1i0.932.813.660 (2)153
C28—H28···Cl1ii0.932.803.502 (2)133
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
C14—H14⋯Cl1i 0.932.813.660 (2)153
C28—H28⋯Cl1ii 0.932.803.502 (2)133

Symmetry codes: (i) ; (ii) .

  5 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Novel palladium(II) and platinum(II) complexes with 1H-benzimidazol-2-ylmethyl-N-(4-bromo-phenyl)-amine: structural studies and anticancer activity.

Authors:  Nour T Abdel Ghani; Ahmed M Mansour
Journal:  Eur J Med Chem       Date:  2011-11-15       Impact factor: 6.514

3.  Antiparkinsonian activity and dopamine receptor binding studies of imidazolone derivatives.

Authors:  P K Naithani; V K Srivastava; A K Saxena; J P Barthwal; T K Gupta; K Shanker
Journal:  Indian J Exp Biol       Date:  1990-12       Impact factor: 0.818

4.  A new class of symmetric bisbenzimidazole-based DNA minor groove-binding agents showing antitumor activity.

Authors:  J Mann; A Baron; Y Opoku-Boahen; E Johansson; G Parkinson; L R Kelland; S Neidle
Journal:  J Med Chem       Date:  2001-01-18       Impact factor: 7.446

5.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  5 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.