| Literature DB >> 24764943 |
Aroa Pache1, Amaia Iturrospe1, Leire San Felices1, Santiago Reinoso1, Juan M Gutiérrez-Zorrilla1.
Abstract
In the title compound, [Cu(C5H3N2O2)2(H2O)2], the Cu(II) ion, located on an inversion center, exhibits an octa-hedral coordination geometry. The equatorial plane is defined by two trans-related N,O-bidentate pyridazine-3-carboxyl-ate ligands and the axial positions are occupied by two water mol-ecules. In the crystal, mol-ecules are connected by O-H⋯O hydrogen bonds between the water mol-ecules and the noncoordinating carboxyl-ate O atoms, forming layers parallel to the bc plane. The layers are stacked along the a axis by further O-H⋯O hydrogen bonds between the water mol-ecules and the coordinating carboxyl-ate O atoms. Weak C-H⋯O hydrogen bonds are also observed between the pyridazine rings and the water mol-ecules and between the pyridazine rings and the non-coordinating carboxyl-ate O atoms.Entities:
Year: 2014 PMID: 24764943 PMCID: PMC3998405 DOI: 10.1107/S1600536814004334
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| [Cu(C5H3N2O2)2(H2O)2] | |
| Monoclinic, | Mo |
| Hall symbol: -P 2ybc | Cell parameters from 1663 reflections |
| θ = 2.8–28.4° | |
| µ = 1.89 mm−1 | |
| β = 101.837 (3)° | Prism, blue |
| 0.19 × 0.09 × 0.06 mm | |
| Agilent SuperNova diffractometer | 1216 independent reflections |
| Radiation source: Nova (Mo) X-ray micro-source | 1077 reflections with |
| Multilayer optics monochromator | |
| Detector resolution: 16.2439 pixels mm-1 | θmax = 26.5°, θmin = 2.8° |
| ω scans | |
| Absorption correction: numerical ( | |
| 2532 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H atoms treated by a mixture of independent and constrained refinement | |
| 1216 reflections | (Δ/σ)max < 0.001 |
| 105 parameters | Δρmax = 0.44 e Å−3 |
| 3 restraints | Δρmin = −0.45 e Å−3 |
| Experimental. IR (cm-1): 3554(s), 3315(s), 3233(s), 1628(s), 1571(m), 1578(s), 1365(w), 1231(w), 1152(w), 1091(w), 1072(w), 1039(w), 978(m), 851(m), 785(m), 722(m), 669(w), 536(w), 440(w). |
| Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes. |
| Refinement. Refinement of |
| C3 | 0.4961 (4) | 0.27046 (19) | 0.4096 (2) | 0.0083 (4) | |
| C4 | 0.4421 (4) | 0.15278 (19) | 0.3920 (2) | 0.0107 (4) | |
| H4 | 0.5153 | 0.1071 | 0.3318 | 0.013* | |
| C5 | 0.2754 (4) | 0.10781 (19) | 0.4680 (2) | 0.0106 (5) | |
| H5 | 0.2313 | 0.03 | 0.4606 | 0.013* | |
| C6 | 0.1737 (4) | 0.18136 (19) | 0.5564 (2) | 0.0111 (5) | |
| H6 | 0.0632 | 0.1503 | 0.6089 | 0.013* | |
| C7 | 0.6781 (4) | 0.33471 (19) | 0.3358 (2) | 0.0097 (4) | |
| Cu1 | 0.5 | 0.5 | 0.5 | 0.00820 (13) | |
| N1 | 0.2267 (3) | 0.29375 (16) | 0.5696 (2) | 0.0101 (4) | |
| N2 | 0.3890 (3) | 0.33637 (16) | 0.49462 (18) | 0.0084 (4) | |
| O1 | 0.7022 (3) | 0.44303 (13) | 0.36438 (16) | 0.0100 (3) | |
| O2 | 0.7873 (3) | 0.28108 (13) | 0.25561 (17) | 0.0135 (4) | |
| O1W | 0.1555 (3) | 0.53934 (14) | 0.30161 (17) | 0.0121 (3) | |
| H1WA | 0.014 (3) | 0.514 (2) | 0.321 (3) | 0.024 (8)* | |
| H1WB | 0.149 (6) | 0.6143 (9) | 0.292 (4) | 0.051 (11)* |
| C3 | 0.0088 (10) | 0.0095 (11) | 0.0063 (10) | 0.0001 (8) | 0.0005 (8) | 0.0003 (8) |
| C4 | 0.0128 (11) | 0.0094 (11) | 0.0094 (10) | 0.0035 (9) | 0.0014 (9) | −0.0004 (8) |
| C5 | 0.0107 (10) | 0.0082 (11) | 0.0117 (11) | −0.0007 (8) | −0.0007 (9) | 0.0019 (8) |
| C6 | 0.0106 (10) | 0.0125 (11) | 0.0106 (11) | −0.0011 (9) | 0.0028 (9) | 0.0014 (9) |
| C7 | 0.0091 (10) | 0.0120 (11) | 0.0080 (10) | −0.0007 (8) | 0.0018 (9) | 0.0001 (9) |
| Cu1 | 0.0111 (2) | 0.0052 (2) | 0.0101 (2) | −0.00061 (14) | 0.00618 (15) | −0.00061 (14) |
| N1 | 0.0107 (9) | 0.0099 (9) | 0.0104 (9) | −0.0019 (7) | 0.0039 (8) | −0.0002 (7) |
| N2 | 0.0091 (9) | 0.0092 (9) | 0.0072 (9) | 0.0007 (7) | 0.0021 (7) | 0.0013 (7) |
| O1 | 0.0112 (7) | 0.0071 (8) | 0.0128 (8) | −0.0012 (6) | 0.0052 (6) | 0.0004 (6) |
| O2 | 0.0158 (8) | 0.0120 (8) | 0.0152 (8) | −0.0009 (6) | 0.0094 (7) | −0.0033 (6) |
| O1W | 0.0101 (8) | 0.0105 (8) | 0.0161 (8) | 0.0006 (6) | 0.0037 (7) | 0.0023 (7) |
| C3—N2 | 1.334 (3) | C7—C3 | 1.520 (3) |
| C3—C4 | 1.395 (3) | Cu1—O1i | 1.9792 (15) |
| C3—C7 | 1.520 (3) | Cu1—O1 | 1.9792 (15) |
| C4—C5 | 1.374 (3) | Cu1—N2 | 1.9822 (18) |
| C4—H4 | 0.93 | Cu1—N2i | 1.9822 (18) |
| C5—C6 | 1.393 (3) | Cu1—O1W | 2.4207 (16) |
| C5—H5 | 0.93 | Cu1—O1Wi | 2.4207 (16) |
| C6—N1 | 1.331 (3) | N1—N2 | 1.339 (3) |
| C6—H6 | 0.93 | O1W—H1WA | 0.872 (10) |
| C7—O2 | 1.231 (3) | O1W—H1WB | 0.872 (10) |
| C7—O1 | 1.283 (3) | ||
| N2—C3—C4 | 121.7 (2) | O1i—Cu1—N2i | 82.52 (7) |
| N2—C3—C7 | 114.28 (19) | N2—Cu1—N2i | 180 |
| C4—C3—C7 | 124.0 (2) | O1—Cu1—O1W | 88.90 (6) |
| C5—C4—C3 | 116.6 (2) | O1i—Cu1—O1W | 91.10 (6) |
| C5—C4—H4 | 121.7 | N2—Cu1—O1W | 88.82 (6) |
| C3—C4—H4 | 121.7 | N2i—Cu1—O1W | 91.18 (6) |
| C4—C5—C6 | 118.6 (2) | O1—Cu1—O1Wi | 91.10 (6) |
| C4—C5—H5 | 120.7 | O1i—Cu1—O1Wi | 88.90 (6) |
| C6—C5—H5 | 120.7 | N2—Cu1—O1Wi | 91.18 (6) |
| N1—C6—C5 | 123.4 (2) | N2i—Cu1—O1Wi | 88.82 (6) |
| N1—C6—H6 | 118.3 | O1W—Cu1—O1Wi | 180 |
| C5—C6—H6 | 118.3 | C6—N1—N2 | 117.37 (19) |
| O2—C7—O1 | 125.8 (2) | C3—N2—N1 | 122.33 (19) |
| O2—C7—C3 | 119.1 (2) | C3—N2—Cu1 | 113.24 (15) |
| O1—C7—C3 | 115.06 (19) | N1—N2—Cu1 | 124.43 (14) |
| O1i—Cu1—O1 | 180 | C7—O1—Cu1 | 114.89 (13) |
| O1—Cu1—N2 | 82.52 (7) | Cu1—O1W—H1WA | 109.8 (19) |
| O1i—Cu1—N2 | 97.48 (7) | Cu1—O1W—H1WB | 106 (2) |
| O1—Cu1—N2i | 97.48 (7) | H1WA—O1W—H1WB | 109 (2) |
| N2—C3—C4—C5 | −0.8 (3) | O1W—Cu1—N2—C3 | 89.46 (15) |
| C7—C3—C4—C5 | 179.22 (19) | O1Wi—Cu1—N2—C3 | −90.54 (15) |
| C3—C4—C5—C6 | −0.2 (3) | O1—Cu1—N2—N1 | 179.32 (17) |
| C4—C5—C6—N1 | 1.1 (3) | O1i—Cu1—N2—N1 | −0.68 (17) |
| C5—C6—N1—N2 | −0.9 (3) | O1W—Cu1—N2—N1 | −91.63 (16) |
| C4—C3—N2—N1 | 1.0 (3) | O1Wi—Cu1—N2—N1 | 88.37 (16) |
| C7—C3—N2—N1 | −179.04 (18) | O2—C7—O1—Cu1 | −179.34 (18) |
| C4—C3—N2—Cu1 | 179.92 (16) | C3—C7—O1—Cu1 | 0.8 (2) |
| C7—C3—N2—Cu1 | −0.1 (2) | N2—Cu1—O1i—C7i | −179.30 (15) |
| C6—N1—N2—C3 | −0.1 (3) | N2—Cu1—O1—C7 | −0.70 (15) |
| C6—N1—N2—Cu1 | −178.91 (15) | O1W—Cu1—O1—C7 | −89.65 (15) |
| O1—Cu1—N2—C3 | 0.41 (14) | O1Wi—Cu1—O1—C7 | 90.35 (15) |
| O1i—Cu1—N2—C3 | −179.59 (14) |
| H··· | ||||
| O1 | 0.87 (2) | 1.99 (2) | 2.865 (2) | 175 (2) |
| O1 | 0.87 (1) | 2.03 (2) | 2.878 (2) | 165 (3) |
| C4—H4···O1 | 0.93 | 2.52 | 3.403 (3) | 158 |
| C6—H6···O2v | 0.93 | 2.39 | 3.141 (3) | 138 |
Selected bond lengths (Å)
| Cu1—O1 | 1.9792 (15) |
| Cu1—N2 | 1.9822 (18) |
| Cu1—O1 | 2.4207 (16) |
Hydrogen-bond geometry (Å, °)
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| O1 | 0.87 (2) | 1.99 (2) | 2.865 (2) | 175 (2) |
| O1 | 0.87 (1) | 2.03 (2) | 2.878 (2) | 165 (3) |
| C4—H4⋯O1 | 0.93 | 2.52 | 3.403 (3) | 158 |
| C6—H6⋯O2iv | 0.93 | 2.39 | 3.141 (3) | 138 |
Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .