Literature DB >> 24764943

trans-Di-aqua-bis-(pyridazine-3-carboxyl-ato-κ(2) N (2),O)copper(II).

Aroa Pache1, Amaia Iturrospe1, Leire San Felices1, Santiago Reinoso1, Juan M Gutiérrez-Zorrilla1.   

Abstract

In the title compound, [Cu(C5H3N2O2)2(H2O)2], the Cu(II) ion, located on an inversion center, exhibits an octa-hedral coordination geometry. The equatorial plane is defined by two trans-related N,O-bidentate pyridazine-3-carboxyl-ate ligands and the axial positions are occupied by two water mol-ecules. In the crystal, mol-ecules are connected by O-H⋯O hydrogen bonds between the water mol-ecules and the noncoordinating carboxyl-ate O atoms, forming layers parallel to the bc plane. The layers are stacked along the a axis by further O-H⋯O hydrogen bonds between the water mol-ecules and the coordinating carboxyl-ate O atoms. Weak C-H⋯O hydrogen bonds are also observed between the pyridazine rings and the water mol-ecules and between the pyridazine rings and the non-coordinating carboxyl-ate O atoms.

Entities:  

Year:  2014        PMID: 24764943      PMCID: PMC3998405          DOI: 10.1107/S1600536814004334

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the isotypic zinc complex, see: Gryz et al. (2004 ▶). For a related cobalt(II) complex which contains two non-coordin­ating water mol­ecules, see: Artetxe et al. (2013 ▶).

Experimental

Crystal data

[Cu(C5H3N2O2)2(H2O)2] M = 345.76 Monoclinic, a = 5.4014 (1) Å b = 11.5633 (3) Å c = 9.6283 (2) Å β = 101.837 (3)° V = 588.58 (2) Å3 Z = 2 Mo Kα radiation μ = 1.89 mm−1 T = 100 K 0.19 × 0.09 × 0.06 mm

Data collection

Agilent SuperNova diffractometer Absorption correction: numerical (CrysAlis PRO; Agilent, 2012 ▶) T min = 0.772, T max = 0.898 2532 measured reflections 1216 independent reflections 1077 reflections with I > 2σ(I) R int = 0.022

Refinement

R[F 2 > 2σ(F 2)] = 0.027 wR(F 2) = 0.065 S = 1.06 1216 reflections 105 parameters 3 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.44 e Å−3 Δρmin = −0.45 e Å−3 Data collection: CrysAlis PRO (Agilent, 2012 ▶); cell refinement: CrysAlis PRO; data reduction: CrysAlis RED (Agilent, 2012 ▶); program(s) used to solve structure: OLEX2 (Dolomanov et al., 2009 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012 ▶) and DIAMOND (Brandenburg, 2010 ▶); software used to prepare material for publication: WinGX (Farrugia, 2012 ▶). Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536814004334/is5342sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536814004334/is5342Isup2.hkl CCDC reference: 988680 Additional supporting information: crystallographic information; 3D view; checkCIF report
[Cu(C5H3N2O2)2(H2O)2]F(000) = 350
Mr = 345.76Dx = 1.951 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 1663 reflections
a = 5.4014 (1) Åθ = 2.8–28.4°
b = 11.5633 (3) ŵ = 1.89 mm1
c = 9.6283 (2) ÅT = 100 K
β = 101.837 (3)°Prism, blue
V = 588.58 (2) Å30.19 × 0.09 × 0.06 mm
Z = 2
Agilent SuperNova diffractometer1216 independent reflections
Radiation source: Nova (Mo) X-ray micro-source1077 reflections with I > 2σ(I)
Multilayer optics monochromatorRint = 0.022
Detector resolution: 16.2439 pixels mm-1θmax = 26.5°, θmin = 2.8°
ω scansh = −6→6
Absorption correction: numerical (CrysAlis PRO; Agilent, 2012)k = −13→14
Tmin = 0.772, Tmax = 0.898l = −12→9
2532 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.027Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.065H atoms treated by a mixture of independent and constrained refinement
S = 1.06w = 1/[σ2(Fo2) + (0.0235P)2 + 0.6643P] where P = (Fo2 + 2Fc2)/3
1216 reflections(Δ/σ)max < 0.001
105 parametersΔρmax = 0.44 e Å3
3 restraintsΔρmin = −0.45 e Å3
Experimental. IR (cm-1): 3554(s), 3315(s), 3233(s), 1628(s), 1571(m), 1578(s), 1365(w), 1231(w), 1152(w), 1091(w), 1072(w), 1039(w), 978(m), 851(m), 785(m), 722(m), 669(w), 536(w), 440(w).
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C30.4961 (4)0.27046 (19)0.4096 (2)0.0083 (4)
C40.4421 (4)0.15278 (19)0.3920 (2)0.0107 (4)
H40.51530.10710.33180.013*
C50.2754 (4)0.10781 (19)0.4680 (2)0.0106 (5)
H50.23130.030.46060.013*
C60.1737 (4)0.18136 (19)0.5564 (2)0.0111 (5)
H60.06320.15030.60890.013*
C70.6781 (4)0.33471 (19)0.3358 (2)0.0097 (4)
Cu10.50.50.50.00820 (13)
N10.2267 (3)0.29375 (16)0.5696 (2)0.0101 (4)
N20.3890 (3)0.33637 (16)0.49462 (18)0.0084 (4)
O10.7022 (3)0.44303 (13)0.36438 (16)0.0100 (3)
O20.7873 (3)0.28108 (13)0.25561 (17)0.0135 (4)
O1W0.1555 (3)0.53934 (14)0.30161 (17)0.0121 (3)
H1WA0.014 (3)0.514 (2)0.321 (3)0.024 (8)*
H1WB0.149 (6)0.6143 (9)0.292 (4)0.051 (11)*
U11U22U33U12U13U23
C30.0088 (10)0.0095 (11)0.0063 (10)0.0001 (8)0.0005 (8)0.0003 (8)
C40.0128 (11)0.0094 (11)0.0094 (10)0.0035 (9)0.0014 (9)−0.0004 (8)
C50.0107 (10)0.0082 (11)0.0117 (11)−0.0007 (8)−0.0007 (9)0.0019 (8)
C60.0106 (10)0.0125 (11)0.0106 (11)−0.0011 (9)0.0028 (9)0.0014 (9)
C70.0091 (10)0.0120 (11)0.0080 (10)−0.0007 (8)0.0018 (9)0.0001 (9)
Cu10.0111 (2)0.0052 (2)0.0101 (2)−0.00061 (14)0.00618 (15)−0.00061 (14)
N10.0107 (9)0.0099 (9)0.0104 (9)−0.0019 (7)0.0039 (8)−0.0002 (7)
N20.0091 (9)0.0092 (9)0.0072 (9)0.0007 (7)0.0021 (7)0.0013 (7)
O10.0112 (7)0.0071 (8)0.0128 (8)−0.0012 (6)0.0052 (6)0.0004 (6)
O20.0158 (8)0.0120 (8)0.0152 (8)−0.0009 (6)0.0094 (7)−0.0033 (6)
O1W0.0101 (8)0.0105 (8)0.0161 (8)0.0006 (6)0.0037 (7)0.0023 (7)
C3—N21.334 (3)C7—C31.520 (3)
C3—C41.395 (3)Cu1—O1i1.9792 (15)
C3—C71.520 (3)Cu1—O11.9792 (15)
C4—C51.374 (3)Cu1—N21.9822 (18)
C4—H40.93Cu1—N2i1.9822 (18)
C5—C61.393 (3)Cu1—O1W2.4207 (16)
C5—H50.93Cu1—O1Wi2.4207 (16)
C6—N11.331 (3)N1—N21.339 (3)
C6—H60.93O1W—H1WA0.872 (10)
C7—O21.231 (3)O1W—H1WB0.872 (10)
C7—O11.283 (3)
N2—C3—C4121.7 (2)O1i—Cu1—N2i82.52 (7)
N2—C3—C7114.28 (19)N2—Cu1—N2i180
C4—C3—C7124.0 (2)O1—Cu1—O1W88.90 (6)
C5—C4—C3116.6 (2)O1i—Cu1—O1W91.10 (6)
C5—C4—H4121.7N2—Cu1—O1W88.82 (6)
C3—C4—H4121.7N2i—Cu1—O1W91.18 (6)
C4—C5—C6118.6 (2)O1—Cu1—O1Wi91.10 (6)
C4—C5—H5120.7O1i—Cu1—O1Wi88.90 (6)
C6—C5—H5120.7N2—Cu1—O1Wi91.18 (6)
N1—C6—C5123.4 (2)N2i—Cu1—O1Wi88.82 (6)
N1—C6—H6118.3O1W—Cu1—O1Wi180
C5—C6—H6118.3C6—N1—N2117.37 (19)
O2—C7—O1125.8 (2)C3—N2—N1122.33 (19)
O2—C7—C3119.1 (2)C3—N2—Cu1113.24 (15)
O1—C7—C3115.06 (19)N1—N2—Cu1124.43 (14)
O1i—Cu1—O1180C7—O1—Cu1114.89 (13)
O1—Cu1—N282.52 (7)Cu1—O1W—H1WA109.8 (19)
O1i—Cu1—N297.48 (7)Cu1—O1W—H1WB106 (2)
O1—Cu1—N2i97.48 (7)H1WA—O1W—H1WB109 (2)
N2—C3—C4—C5−0.8 (3)O1W—Cu1—N2—C389.46 (15)
C7—C3—C4—C5179.22 (19)O1Wi—Cu1—N2—C3−90.54 (15)
C3—C4—C5—C6−0.2 (3)O1—Cu1—N2—N1179.32 (17)
C4—C5—C6—N11.1 (3)O1i—Cu1—N2—N1−0.68 (17)
C5—C6—N1—N2−0.9 (3)O1W—Cu1—N2—N1−91.63 (16)
C4—C3—N2—N11.0 (3)O1Wi—Cu1—N2—N188.37 (16)
C7—C3—N2—N1−179.04 (18)O2—C7—O1—Cu1−179.34 (18)
C4—C3—N2—Cu1179.92 (16)C3—C7—O1—Cu10.8 (2)
C7—C3—N2—Cu1−0.1 (2)N2—Cu1—O1i—C7i−179.30 (15)
C6—N1—N2—C3−0.1 (3)N2—Cu1—O1—C7−0.70 (15)
C6—N1—N2—Cu1−178.91 (15)O1W—Cu1—O1—C7−89.65 (15)
O1—Cu1—N2—C30.41 (14)O1Wi—Cu1—O1—C790.35 (15)
O1i—Cu1—N2—C3−179.59 (14)
D—H···AD—HH···AD···AD—H···A
O1W—H1WA···O1ii0.87 (2)1.99 (2)2.865 (2)175 (2)
O1W—H1WB···O2iii0.87 (1)2.03 (2)2.878 (2)165 (3)
C4—H4···O1Wiv0.932.523.403 (3)158
C6—H6···O2v0.932.393.141 (3)138
Table 1

Selected bond lengths (Å)

Cu1—O11.9792 (15)
Cu1—N21.9822 (18)
Cu1—O1W 2.4207 (16)
Table 2

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
O1W—H1WA⋯O1i 0.87 (2)1.99 (2)2.865 (2)175 (2)
O1W—H1WB⋯O2ii 0.87 (1)2.03 (2)2.878 (2)165 (3)
C4—H4⋯O1W iii 0.932.523.403 (3)158
C6—H6⋯O2iv 0.932.393.141 (3)138

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .

  2 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  trans-Di-aqua-bis-(pyridazine-3-carboxyl-ato-κ(2) N (2),O)cobalt(II) dihydrate.

Authors:  Beñat Artetxe; Santiago Reinoso; Leire San Felices; Jagoba Martín-Caballero; Juan M Gutiérrez-Zorrilla
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-06-29
  2 in total

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