Literature DB >> 24764859

4,4'-({[(Pyridine-2,6-di-yl)bis-(methyl-ene)]bis-(-oxy)}bis-(methyl-ene))dibenzo-nitrile.

Bohari M Yamin1, Nurul A Kamalulazmy1, Nurul I Hassan1.   

Abstract

The complete title molecule, C23H19N3O2, is generated by a twofold axis passing through the central ring. The two oxymethyl-benzo-nitrile arms are attached at the meta positions of the central pyridine ring. The dihedral angle between the pyridine ring and benzene ring of both arms is 84.55 (6)° while the benzene rings make a dihedral angle of 46.07 (7)°. In the crystal, weak C-H⋯π inter-actions link the molecules sheets parallel to the ac plane.

Entities:  

Year:  2014        PMID: 24764859      PMCID: PMC3998298          DOI: 10.1107/S1600536814000245

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For bond-length data, see: Allen et al. (1987 ▶). For related structures, see: Lima et al. (2011 ▶); Wang & Zhao (2008 ▶): Zhao (2008 ▶); Xiao & Zhao (2008 ▶).

Experimental

Crystal data

C23H19N3O2 M = 369.41 Monoclinic, a = 14.1838 (7) Å b = 7.5493 (4) Å c = 18.4619 (12) Å β = 107.837 (2)° V = 1881.83 (18) Å3 Z = 4 Mo Kα radiation μ = 0.09 mm−1 T = 296 K 0.49 × 0.44 × 0.34 mm

Data collection

Bruker SMART APEX CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2009 ▶) T min = 0.960, T max = 0.972 21611 measured reflections 1846 independent reflections 1519 reflections with I > 2σ(I) R int = 0.040

Refinement

R[F 2 > 2σ(F 2)] = 0.039 wR(F 2) = 0.106 S = 1.05 1846 reflections 129 parameters H-atom parameters constrained Δρmax = 0.10 e Å−3 Δρmin = −0.12 e Å−3 Data collection: SMART (Bruker, 2009 ▶); cell refinement: SAINT (Bruker, 2009 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536814000245/hg5373sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536814000245/hg5373Isup2.hkl Click here for additional data file. Supporting information file. DOI: 10.1107/S1600536814000245/hg5373Isup3.cml CCDC reference: Additional supporting information: crystallographic information; 3D view; checkCIF report
C23H19N3O2F(000) = 776
Mr = 369.41Dx = 1.304 Mg m3
Monoclinic, C2/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -C 2ycCell parameters from 8925 reflections
a = 14.1838 (7) Åθ = 3.0–26.0°
b = 7.5493 (4) ŵ = 0.09 mm1
c = 18.4619 (12) ÅT = 296 K
β = 107.837 (2)°Block, colourless
V = 1881.83 (18) Å30.49 × 0.44 × 0.34 mm
Z = 4
Bruker SMART APEX CCD area-detector diffractometer1846 independent reflections
Radiation source: fine-focus sealed tube1519 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.040
Detector resolution: 83.66 pixels mm-1θmax = 26.0°, θmin = 3.1°
ω scanh = −17→17
Absorption correction: multi-scan (SADABS; Bruker, 2009)k = −9→9
Tmin = 0.960, Tmax = 0.972l = −22→22
21611 measured reflections
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.039H-atom parameters constrained
wR(F2) = 0.106w = 1/[σ2(Fo2) + (0.0485P)2 + 0.9538P] where P = (Fo2 + 2Fc2)/3
S = 1.05(Δ/σ)max < 0.001
1846 reflectionsΔρmax = 0.10 e Å3
129 parametersΔρmin = −0.12 e Å3
0 restraintsExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.0196 (14)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.73355 (7)0.39554 (16)0.18488 (6)0.0547 (3)
N11.00000.4615 (2)0.25000.0416 (4)
N20.25164 (10)0.0851 (2)−0.08574 (9)0.0706 (5)
C11.00000.0946 (3)0.25000.0530 (6)
H11.0000−0.02860.25000.064*
C20.91206 (10)0.1866 (2)0.23419 (8)0.0495 (4)
H20.85190.12690.22300.059*
C30.91523 (9)0.3697 (2)0.23533 (7)0.0415 (4)
C40.82379 (10)0.4813 (2)0.22471 (10)0.0560 (4)
H4A0.82060.51690.27440.067*
H4B0.83000.58800.19730.067*
C50.71745 (10)0.3882 (2)0.10575 (8)0.0463 (4)
H5A0.76590.31020.09510.056*
H5B0.72570.50540.08700.056*
C60.61510 (9)0.32139 (17)0.06575 (8)0.0369 (3)
C70.58164 (10)0.3218 (2)−0.01320 (8)0.0429 (4)
H70.62250.3645−0.04020.052*
C80.48871 (11)0.2599 (2)−0.05204 (8)0.0452 (4)
H80.46720.2599−0.10500.054*
C90.42703 (10)0.19725 (18)−0.01217 (8)0.0403 (3)
C100.45942 (10)0.19748 (19)0.06662 (8)0.0443 (4)
H100.41820.15620.09360.053*
C110.55300 (10)0.25913 (19)0.10512 (8)0.0422 (4)
H110.57460.25880.15800.051*
C120.32950 (11)0.1331 (2)−0.05269 (9)0.0496 (4)
U11U22U33U12U13U23
O10.0282 (5)0.0835 (9)0.0491 (6)−0.0047 (5)0.0069 (4)−0.0156 (5)
N10.0293 (8)0.0550 (10)0.0369 (8)0.0000.0050 (6)0.000
N20.0447 (8)0.0701 (10)0.0859 (11)−0.0081 (7)0.0035 (7)−0.0136 (8)
C10.0554 (13)0.0502 (13)0.0511 (12)0.0000.0130 (10)0.000
C20.0393 (8)0.0624 (10)0.0446 (8)−0.0113 (7)0.0095 (6)−0.0047 (7)
C30.0302 (7)0.0592 (9)0.0329 (7)−0.0029 (6)0.0063 (5)−0.0071 (6)
C40.0297 (7)0.0736 (11)0.0599 (9)−0.0005 (7)0.0065 (6)−0.0220 (8)
C50.0327 (7)0.0542 (9)0.0498 (8)0.0018 (6)0.0095 (6)−0.0016 (7)
C60.0302 (6)0.0342 (7)0.0442 (7)0.0066 (5)0.0084 (5)−0.0003 (6)
C70.0403 (7)0.0467 (8)0.0441 (8)0.0014 (6)0.0164 (6)−0.0001 (6)
C80.0469 (8)0.0485 (8)0.0368 (7)0.0028 (7)0.0080 (6)−0.0030 (6)
C90.0343 (7)0.0344 (7)0.0478 (8)0.0030 (5)0.0061 (6)−0.0013 (6)
C100.0368 (7)0.0469 (8)0.0500 (8)0.0009 (6)0.0142 (6)0.0073 (6)
C110.0381 (7)0.0480 (8)0.0376 (7)0.0046 (6)0.0071 (6)0.0040 (6)
C120.0419 (8)0.0432 (8)0.0588 (9)0.0025 (7)0.0080 (7)−0.0039 (7)
O1—C51.4088 (18)C5—H5A0.9700
O1—C41.4217 (17)C5—H5B0.9700
N1—C3i1.3417 (16)C6—C111.3846 (19)
N1—C31.3417 (16)C6—C71.3879 (19)
N2—C121.1449 (19)C7—C81.3751 (19)
C1—C21.3786 (19)C7—H70.9300
C1—C2i1.3786 (19)C8—C91.387 (2)
C1—H10.9300C8—H80.9300
C2—C31.382 (2)C9—C101.3847 (19)
C2—H20.9300C9—C121.4400 (19)
C3—C41.508 (2)C10—C111.3804 (19)
C4—H4A0.9700C10—H100.9300
C4—H4B0.9700C11—H110.9300
C5—C61.5001 (18)
C5—O1—C4112.87 (12)C6—C5—H5B109.6
C3i—N1—C3117.77 (18)H5A—C5—H5B108.1
C2—C1—C2i119.5 (2)C11—C6—C7118.96 (12)
C2—C1—H1120.3C11—C6—C5122.07 (12)
C2i—C1—H1120.3C7—C6—C5118.97 (12)
C1—C2—C3118.50 (14)C8—C7—C6120.77 (13)
C1—C2—H2120.8C8—C7—H7119.6
C3—C2—H2120.8C6—C7—H7119.6
N1—C3—C2122.86 (14)C7—C8—C9119.92 (13)
N1—C3—C4114.79 (14)C7—C8—H8120.0
C2—C3—C4122.25 (13)C9—C8—H8120.0
O1—C4—C3114.53 (13)C10—C9—C8119.77 (12)
O1—C4—H4A108.6C10—C9—C12120.20 (13)
C3—C4—H4A108.6C8—C9—C12120.03 (13)
O1—C4—H4B108.6C11—C10—C9119.91 (13)
C3—C4—H4B108.6C11—C10—H10120.0
H4A—C4—H4B107.6C9—C10—H10120.0
O1—C5—C6110.41 (11)C10—C11—C6120.67 (13)
O1—C5—H5A109.6C10—C11—H11119.7
C6—C5—H5A109.6C6—C11—H11119.7
O1—C5—H5B109.6N2—C12—C9178.67 (19)
C2i—C1—C2—C3−0.50 (9)C11—C6—C7—C8−0.7 (2)
C3i—N1—C3—C2−0.54 (10)C5—C6—C7—C8179.27 (13)
C3i—N1—C3—C4175.99 (14)C6—C7—C8—C90.5 (2)
C1—C2—C3—N11.1 (2)C7—C8—C9—C100.0 (2)
C1—C2—C3—C4−175.22 (11)C7—C8—C9—C12179.68 (14)
C5—O1—C4—C3−76.99 (18)C8—C9—C10—C11−0.3 (2)
N1—C3—C4—O1159.71 (12)C12—C9—C10—C11180.00 (13)
C2—C3—C4—O1−23.7 (2)C9—C10—C11—C60.1 (2)
C4—O1—C5—C6−171.60 (12)C7—C6—C11—C100.3 (2)
O1—C5—C6—C11−6.58 (19)C5—C6—C11—C10−179.59 (13)
O1—C5—C6—C7173.49 (12)
D—H···AD—HH···AD···AD—H···A
C11—H11···O10.932.392.735 (2)102
C8—H8···Cgii0.932.873.7180 (15)152
Table 1

Hydrogen-bond geometry (Å, °)

Cg is the centroid of the N1/C1–C3/C2′/C3′ ring.

D—H⋯A D—HH⋯A DA D—H⋯A
C8—H8⋯Cg i 0.932.873.7180 (15)152

Symmetry code: (i) .

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3.  4,4'-[(1,3,4-Thia-diazole-2,5-di-yl)bis-(thio-methyl-ene)]dibenzonitrile.

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4.  4,4'-(1,8-Naphthalene-1,8-di-yl)dibenzonitrile.

Authors:  Carlos F Lima; Ligia R Gomes; Luís M N B F Santos; John Nicolson Low
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5.  4,4'-(Oxydimethyl-ene)dibenzonitrile.

Authors:  Jie Xiao; Hong Zhao
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-07-09

6.  Structure validation in chemical crystallography.

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