Literature DB >> 24764853

2-[(E)-2-(3,4-Di-chloro-benzyl-idene)hydrazin-1-yl]quinoxaline.

Thais C M Noguiera1, Alexandra C Pinheiro1, Marcus V N de Souza1, James L Wardell2, Edward R T Tiekink3.   

Abstract

The 21 non-H atoms of the title compound, C15H10Cl2N4, are almost planar (r.m.s. deviation = 0.032 Å); the conformation about the N=C bond [1.277 (6) Å] is E. In the crystal, zigzag supra-molecular chains along the c axis (glide symmetry) are formed via N-H⋯N hydrogen bonds. These associate along the b axis by π-π inter-actions between the fused and terminal benzene rings [inter-centroid distance = 3.602 (3) Å] so that layers form in the bc plane.

Entities:  

Year:  2014        PMID: 24764853      PMCID: PMC3998292          DOI: 10.1107/S1600536814000415

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the use of quinoxaline compounds as dyestuffs and biological agents, see: Mielcke et al. (2012 ▶); Mamedov & Zhukova (2012 ▶); Rodrigues et al. (2014 ▶). For a related hydrazone structure, see: de Souza et al. (2013 ▶).

Experimental

Crystal data

C15H10Cl2N4 M = 317.17 Monoclinic, a = 16.0284 (11) Å b = 6.9756 (4) Å c = 12.4127 (9) Å β = 96.043 (7)° V = 1380.12 (16) Å3 Z = 4 Mo Kα radiation μ = 0.47 mm−1 T = 120 K 0.20 × 0.13 × 0.03 mm

Data collection

Rigaku RAXIS conversion diffractometer Absorption correction: multi-scan (CrystalClear-SM Expert; Rigaku, 2012 ▶) T min = 0.654, T max = 1.000 7037 measured reflections 2385 independent reflections 1670 reflections with I > 2σ(I) R int = 0.043

Refinement

R[F 2 > 2σ(F 2)] = 0.060 wR(F 2) = 0.219 S = 1.20 2385 reflections 193 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.76 e Å−3 Δρmin = −0.65 e Å−3 Data collection: CrystalClear-SM Expert (Rigaku, 2012 ▶); cell refinement: CrystalClear-SM Expert; data reduction: CrystalClear-SM Expert; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012 ▶) and DIAMOND (Brandenburg, 2006 ▶); software used to prepare material for publication: publCIF (Westrip, 2010 ▶). Crystal structure: contains datablock(s) general, I. DOI: 10.1107/S1600536814000415/hg5372sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536814000415/hg5372Isup2.hkl Click here for additional data file. Supporting information file. DOI: 10.1107/S1600536814000415/hg5372Isup3.cml CCDC reference: Additional supporting information: crystallographic information; 3D view; checkCIF report
C15H10Cl2N4F(000) = 648
Mr = 317.17Dx = 1.526 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 5450 reflections
a = 16.0284 (11) Åθ = 3.2–29.1°
b = 6.9756 (4) ŵ = 0.47 mm1
c = 12.4127 (9) ÅT = 120 K
β = 96.043 (7)°Prism, yellow
V = 1380.12 (16) Å30.20 × 0.13 × 0.03 mm
Z = 4
Rigaku RAXIS conversion diffractometer2385 independent reflections
Radiation source: Sealed Tube1670 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.043
Detector resolution: 10.0000 pixels mm-1θmax = 25.0°, θmin = 3.2°
profile data from ω–scansh = −19→17
Absorption correction: multi-scan (CrystalClear-SM Expert; Rigaku, 2012)k = −8→7
Tmin = 0.654, Tmax = 1.000l = −14→14
7037 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.060Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.219H atoms treated by a mixture of independent and constrained refinement
S = 1.20w = 1/[σ2(Fo2) + (0.1005P)2 + 2.9896P] where P = (Fo2 + 2Fc2)/3
2385 reflections(Δ/σ)max < 0.001
193 parametersΔρmax = 0.76 e Å3
0 restraintsΔρmin = −0.65 e Å3
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cl10.92037 (8)0.4044 (2)0.39515 (10)0.0391 (4)
Cl21.01377 (8)0.3943 (2)0.18221 (11)0.0391 (4)
N10.6096 (2)0.6684 (6)0.0737 (3)0.0234 (9)
N20.5269 (2)0.7147 (6)0.0801 (3)0.0249 (9)
H2N0.504 (3)0.718 (7)0.145 (4)0.030*
N30.3991 (2)0.8161 (5)0.0034 (3)0.0206 (9)
N40.4593 (2)0.8165 (6)−0.2031 (3)0.0247 (9)
C10.7406 (3)0.5710 (7)0.1655 (4)0.0256 (11)
C20.7839 (3)0.5206 (7)0.2653 (4)0.0244 (11)
H20.75600.52120.32910.029*
C30.8691 (3)0.4690 (7)0.2706 (4)0.0307 (12)
C40.9107 (3)0.4672 (7)0.1782 (4)0.0281 (11)
C50.8680 (3)0.5232 (7)0.0788 (4)0.0301 (12)
H50.89630.52620.01540.036*
C60.7837 (3)0.5744 (7)0.0738 (4)0.0291 (11)
H60.75490.61250.00640.035*
C70.6523 (3)0.6206 (7)0.1623 (4)0.0235 (11)
H70.62590.61750.22730.028*
C80.4770 (3)0.7668 (6)−0.0107 (3)0.0203 (10)
C90.3477 (3)0.8652 (6)−0.0881 (3)0.0215 (10)
C100.2636 (3)0.9113 (7)−0.0786 (4)0.0225 (10)
H100.24310.9085−0.00950.027*
C110.2105 (3)0.9607 (7)−0.1694 (4)0.0253 (11)
H110.15360.9921−0.16250.030*
C120.2405 (3)0.9648 (7)−0.2726 (4)0.0272 (11)
H120.20380.9993−0.33470.033*
C130.3230 (3)0.9187 (7)−0.2832 (3)0.0233 (10)
H130.34300.9218−0.35260.028*
C140.3777 (3)0.8671 (6)−0.1917 (4)0.0214 (10)
C150.5066 (3)0.7679 (7)−0.1146 (3)0.0222 (10)
H150.56310.7319−0.12020.027*
U11U22U33U12U13U23
Cl10.0337 (8)0.0532 (9)0.0288 (7)0.0025 (6)−0.0040 (5)0.0098 (6)
Cl20.0250 (7)0.0496 (9)0.0422 (8)0.0038 (6)0.0012 (6)0.0045 (6)
N10.022 (2)0.029 (2)0.0190 (19)0.0013 (17)0.0001 (16)−0.0014 (17)
N20.025 (2)0.037 (2)0.0130 (19)0.0015 (19)0.0014 (16)0.0009 (17)
N30.020 (2)0.026 (2)0.0155 (18)−0.0015 (17)−0.0006 (15)−0.0013 (16)
N40.026 (2)0.030 (2)0.0177 (19)0.0012 (19)0.0034 (16)−0.0016 (17)
C10.025 (3)0.024 (2)0.027 (3)0.003 (2)0.000 (2)0.000 (2)
C20.024 (2)0.032 (3)0.015 (2)0.003 (2)−0.0031 (18)0.000 (2)
C30.033 (3)0.021 (2)0.035 (3)−0.009 (2)−0.007 (2)0.002 (2)
C40.024 (2)0.030 (3)0.029 (3)−0.002 (2)0.000 (2)0.001 (2)
C50.031 (3)0.033 (3)0.027 (3)0.000 (2)0.002 (2)0.000 (2)
C60.028 (3)0.033 (3)0.026 (3)−0.005 (2)0.002 (2)−0.003 (2)
C70.027 (3)0.030 (3)0.013 (2)0.002 (2)−0.0005 (18)−0.0013 (19)
C80.027 (2)0.021 (2)0.012 (2)−0.001 (2)0.0000 (18)−0.0011 (17)
C90.027 (2)0.022 (2)0.015 (2)−0.002 (2)0.0009 (18)−0.0037 (18)
C100.023 (2)0.029 (3)0.015 (2)−0.001 (2)0.0025 (18)−0.0006 (19)
C110.023 (2)0.028 (3)0.024 (3)0.001 (2)0.0002 (19)−0.002 (2)
C120.035 (3)0.027 (3)0.017 (2)−0.002 (2)−0.009 (2)0.0006 (19)
C130.027 (3)0.032 (3)0.011 (2)0.002 (2)0.0001 (18)−0.0005 (19)
C140.022 (2)0.024 (2)0.019 (2)0.001 (2)0.0012 (18)−0.0025 (19)
C150.025 (2)0.028 (2)0.014 (2)0.003 (2)−0.0018 (17)−0.0006 (19)
Cl1—C31.733 (5)C5—C61.393 (7)
Cl2—C41.725 (5)C5—H50.9500
N1—C71.277 (6)C6—H60.9500
N1—N21.375 (5)C7—H70.9500
N2—C81.361 (6)C8—C151.421 (6)
N2—H2N0.92 (5)C9—C101.402 (6)
N3—C81.323 (6)C9—C141.420 (6)
N3—C91.375 (6)C10—C111.383 (6)
N4—C151.312 (6)C10—H100.9500
N4—C141.378 (6)C11—C121.414 (6)
C1—C61.392 (7)C11—H110.9500
C1—C21.400 (6)C12—C131.381 (7)
C1—C71.453 (6)C12—H120.9500
C2—C31.406 (7)C13—C141.406 (6)
C2—H20.9500C13—H130.9500
C3—C41.385 (7)C15—H150.9500
C4—C51.401 (7)
C7—N1—N2116.3 (4)C1—C7—H7119.4
C8—N2—N1120.1 (4)N3—C8—N2116.1 (4)
C8—N2—H2N118 (3)N3—C8—C15121.9 (4)
N1—N2—H2N122 (3)N2—C8—C15122.0 (4)
C8—N3—C9116.6 (4)N3—C9—C10119.1 (4)
C15—N4—C14116.8 (4)N3—C9—C14121.3 (4)
C6—C1—C2119.0 (4)C10—C9—C14119.6 (4)
C6—C1—C7122.6 (4)C11—C10—C9120.2 (4)
C2—C1—C7118.3 (4)C11—C10—H10119.9
C1—C2—C3119.6 (4)C9—C10—H10119.9
C1—C2—H2120.2C10—C11—C12120.3 (4)
C3—C2—H2120.2C10—C11—H11119.9
C4—C3—C2120.8 (4)C12—C11—H11119.9
C4—C3—Cl1120.8 (4)C13—C12—C11120.1 (4)
C2—C3—Cl1118.4 (4)C13—C12—H12119.9
C3—C4—C5119.5 (5)C11—C12—H12119.9
C3—C4—Cl2121.4 (4)C12—C13—C14120.3 (4)
C5—C4—Cl2119.0 (4)C12—C13—H13119.9
C6—C5—C4119.5 (5)C14—C13—H13119.9
C6—C5—H5120.2N4—C14—C13120.0 (4)
C4—C5—H5120.2N4—C14—C9120.5 (4)
C1—C6—C5121.4 (5)C13—C14—C9119.5 (4)
C1—C6—H6119.3N4—C15—C8122.9 (4)
C5—C6—H6119.3N4—C15—H15118.5
N1—C7—C1121.1 (4)C8—C15—H15118.5
N1—C7—H7119.4
C7—N1—N2—C8−179.9 (4)N1—N2—C8—C152.6 (7)
C6—C1—C2—C3−1.9 (7)C8—N3—C9—C10177.5 (4)
C7—C1—C2—C3179.0 (4)C8—N3—C9—C14−1.5 (6)
C1—C2—C3—C4−0.1 (7)N3—C9—C10—C11−179.8 (4)
C1—C2—C3—Cl1−179.2 (4)C14—C9—C10—C11−0.8 (7)
C2—C3—C4—C52.0 (7)C9—C10—C11—C120.2 (7)
Cl1—C3—C4—C5−178.9 (4)C10—C11—C12—C130.2 (7)
C2—C3—C4—Cl2−177.1 (4)C11—C12—C13—C140.1 (7)
Cl1—C3—C4—Cl21.9 (6)C15—N4—C14—C13−179.2 (4)
C3—C4—C5—C6−1.9 (8)C15—N4—C14—C9−0.1 (7)
Cl2—C4—C5—C6177.2 (4)C12—C13—C14—N4178.3 (4)
C2—C1—C6—C52.0 (7)C12—C13—C14—C9−0.8 (7)
C7—C1—C6—C5−179.0 (5)N3—C9—C14—N41.0 (7)
C4—C5—C6—C1−0.1 (8)C10—C9—C14—N4−178.0 (4)
N2—N1—C7—C1−179.3 (4)N3—C9—C14—C13−179.8 (4)
C6—C1—C7—N10.7 (7)C10—C9—C14—C131.2 (7)
C2—C1—C7—N1179.8 (4)C14—N4—C15—C8−0.2 (7)
C9—N3—C8—N2−178.7 (4)N3—C8—C15—N4−0.3 (7)
C9—N3—C8—C151.2 (6)N2—C8—C15—N4179.6 (4)
N1—N2—C8—N3−177.5 (4)
D—H···AD—HH···AD···AD—H···A
N2—H2N···N4i0.92 (5)2.10 (5)3.013 (5)171 (4)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
N2—H2N⋯N4i 0.92 (5)2.10 (5)3.013 (5)171 (4)

Symmetry code: (i) .

  2 in total

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Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

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Authors:  Tânia R Mielcke; Alessandra Mascarello; Eduardo Filippi-Chiela; Rafael F Zanin; Guido Lenz; Paulo César Leal; Louise Domeneghini Chiaradia; Louise D Chirardia; Rosendo A Yunes; Ricardo J Nunes; Ana M O Battastini; Fernanda B Morrone; Maria M Campos
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