Literature DB >> 24764848

(R)-N-[(R)-2,2-Di-chloro-1-phenyl-2-(phenyl-sulfon-yl)eth-yl]-2-methyl-propane-2-sulfinamide.

Haiji Huang1, Ya Li1, Jingming Chu1.   

Abstract

The title mol-ecule, C18H21Cl2NO3S2, contains one chiral carbon center and the absolute sterochemistry has been confirmed as as R. An intra-molecular N-H⋯O hydrogen bond occurs and the dihedral angle between the benzene rings is 64.5 (1)°. In the crystal, the mol-ecules are linked by weak C-H⋯O hydrogen bonds, forming a zigzag chain structure extending along the c-axis direction.

Entities:  

Year:  2014        PMID: 24764848      PMCID: PMC3998287          DOI: 10.1107/S1600536813034909

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the use of β-amino sulfones as enzyme inhibitors, see: Tamamura et al. (2003 ▶); Nakatani et al. (2008 ▶); Raja et al. (2009 ▶). For their use as synthetic inter­mediates, see: Pauly et al. (1994 ▶); de Blas et al. (1994 ▶); Carretero et al. (1997 ▶); Alonso et al. (1997 ▶). For their synthesis, see: Zhang et al. (2011 ▶). For the fluorinated analogue, see: Li & Hu (2005 ▶); Liu & Hu (2010 ▶).

Experimental

Crystal data

C18H21Cl2NO3S2 M = 434.38 Orthorhombic, a = 7.924 (2) Å b = 14.772 (4) Å c = 18.151 (5) Å V = 2124.6 (10) Å3 Z = 4 Mo Kα radiation μ = 0.52 mm−1 T = 293 K 0.39 × 0.30 × 0.26 mm

Data collection

Bruker CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 2004 ▶) T min = 0.743, T max = 1.000 11625 measured reflections 4174 independent reflections 3834 reflections with I > 2σ(I) R int = 0.075

Refinement

R[F 2 > 2σ(F 2)] = 0.038 wR(F 2) = 0.086 S = 0.99 4174 reflections 242 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.28 e Å−3 Δρmin = −0.20 e Å−3 Absolute structure: Flack, 1983 ▶: 1786 Friedel pairs Absolute structure parameter: −0.04 (6) Data collection: SMART (Bruker, 2007 ▶); cell refinement: SAINT (Bruker, 2007 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablock(s) I. DOI: 10.1107/S1600536813034909/zs2283sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536813034909/zs2283Isup2.hkl Click here for additional data file. Supporting information file. DOI: 10.1107/S1600536813034909/zs2283Isup3.cml CCDC reference: Additional supporting information: crystallographic information; 3D view; checkCIF report
C18H21Cl2NO3S2F(000) = 904
Mr = 434.38Dx = 1.358 Mg m3
Orthorhombic, P212121Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2ac 2abCell parameters from 4807 reflections
a = 7.924 (2) Åθ = 5.3–51.2°
b = 14.772 (4) ŵ = 0.52 mm1
c = 18.151 (5) ÅT = 293 K
V = 2124.6 (10) Å3Prismatic, colorless
Z = 40.39 × 0.30 × 0.26 mm
Bruker CCD area-detector diffractometer4174 independent reflections
Radiation source: fine-focus sealed tube3834 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.075
φ and ω scansθmax = 26.0°, θmin = 1.8°
Absorption correction: multi-scan (SADABS; Sheldrick, 2004)h = −9→9
Tmin = 0.743, Tmax = 1.000k = −18→12
11625 measured reflectionsl = −22→22
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.038H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.086w = 1/[σ2(Fo2) + (0.0379P)2] where P = (Fo2 + 2Fc2)/3
S = 0.99(Δ/σ)max < 0.001
4174 reflectionsΔρmax = 0.28 e Å3
242 parametersΔρmin = −0.20 e Å3
0 restraintsAbsolute structure: Flack, 1983: 1786 Friedel pairs
Primary atom site location: structure-invariant direct methodsAbsolute structure parameter: −0.04 (6)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
S10.31897 (9)0.05580 (5)0.41327 (3)0.04581 (18)
S2−0.02571 (8)0.04757 (4)0.21496 (3)0.03700 (15)
Cl10.30446 (8)−0.00843 (5)0.15767 (3)0.04829 (18)
Cl20.05808 (9)−0.14312 (4)0.19785 (4)0.05009 (18)
N10.2849 (3)0.04579 (15)0.32217 (10)0.0382 (5)
O10.1580 (3)0.0660 (2)0.45195 (11)0.0862 (8)
O20.0522 (2)0.13428 (12)0.22302 (11)0.0505 (5)
O3−0.1488 (2)0.01835 (13)0.26710 (9)0.0501 (5)
C10.1468 (3)−0.03735 (16)0.22190 (13)0.0356 (5)
C20.2123 (3)−0.04217 (15)0.30187 (12)0.0350 (5)
H20.1156−0.05370.33420.042*
C30.3408 (3)−0.11663 (16)0.31436 (12)0.0350 (5)
C40.5097 (3)−0.10324 (17)0.29887 (13)0.0392 (6)
H40.5458−0.04770.28050.047*
C50.6241 (4)−0.17113 (19)0.31038 (14)0.0481 (7)
H50.7373−0.16160.29930.058*
C60.5737 (4)−0.2531 (2)0.33810 (17)0.0584 (8)
H60.6522−0.29900.34560.070*
C70.4087 (5)−0.2670 (2)0.3544 (2)0.0658 (9)
H70.3742−0.32250.37320.079*
C80.2916 (4)−0.19900 (19)0.34330 (16)0.0534 (7)
H80.1790−0.20880.35540.064*
C90.4166 (4)0.16808 (18)0.41012 (14)0.0459 (7)
C100.5815 (4)0.1612 (2)0.3691 (2)0.0754 (10)
H10A0.56000.14510.31880.113*
H10B0.65090.11570.39160.113*
H10C0.63860.21850.37080.113*
C110.4464 (5)0.1909 (2)0.49142 (18)0.0764 (10)
H11A0.50330.24810.49510.115*
H11B0.51460.14460.51360.115*
H11C0.33990.19430.51650.115*
C120.2961 (5)0.2359 (2)0.37614 (17)0.0702 (10)
H12A0.33460.29620.38650.105*
H12B0.18550.22760.39660.105*
H12C0.29200.22700.32380.105*
C13−0.1098 (3)0.04079 (18)0.12566 (13)0.0391 (6)
C14−0.0407 (4)0.0949 (2)0.07116 (15)0.0514 (7)
H140.05390.13050.08030.062*
C15−0.1168 (4)0.0943 (3)0.00274 (17)0.0673 (9)
H15−0.07240.1292−0.03520.081*
C16−0.2563 (4)0.0429 (2)−0.00949 (16)0.0656 (9)
H16−0.30570.0432−0.05600.079*
C17−0.3265 (4)−0.0098 (2)0.04547 (17)0.0581 (8)
H17−0.4227−0.04410.03640.070*
C18−0.2513 (3)−0.01063 (19)0.11397 (15)0.0463 (6)
H18−0.2961−0.04560.15180.056*
H10.237 (3)0.0892 (18)0.3050 (14)0.041 (8)*
U11U22U33U12U13U23
S10.0602 (4)0.0465 (4)0.0308 (3)−0.0052 (3)−0.0030 (3)0.0027 (3)
S20.0334 (3)0.0386 (3)0.0389 (3)0.0012 (3)−0.0006 (2)−0.0038 (3)
Cl10.0409 (3)0.0641 (4)0.0399 (3)0.0035 (3)0.0099 (3)0.0063 (3)
Cl20.0535 (4)0.0381 (3)0.0587 (4)−0.0048 (3)−0.0079 (3)−0.0113 (3)
N10.0503 (13)0.0327 (11)0.0316 (10)0.0010 (11)−0.0046 (9)0.0017 (9)
O10.0792 (15)0.126 (2)0.0538 (12)−0.0324 (16)0.0265 (12)−0.0116 (13)
O20.0522 (11)0.0372 (10)0.0621 (12)−0.0006 (9)−0.0135 (10)−0.0033 (8)
O30.0396 (9)0.0694 (13)0.0412 (9)0.0064 (9)0.0068 (8)−0.0025 (9)
C10.0339 (12)0.0355 (13)0.0375 (12)−0.0035 (10)0.0007 (10)−0.0024 (10)
C20.0373 (12)0.0343 (12)0.0334 (11)−0.0039 (11)0.0056 (10)0.0023 (10)
C30.0373 (13)0.0325 (13)0.0352 (12)−0.0022 (10)−0.0024 (10)−0.0008 (10)
C40.0414 (14)0.0402 (14)0.0360 (13)0.0010 (11)0.0054 (11)0.0002 (11)
C50.0435 (15)0.0576 (18)0.0433 (14)0.0084 (13)0.0014 (12)−0.0091 (13)
C60.063 (2)0.0442 (17)0.0677 (19)0.0158 (15)−0.0101 (16)−0.0060 (15)
C70.073 (2)0.0365 (16)0.088 (2)−0.0026 (15)−0.0091 (19)0.0145 (15)
C80.0458 (16)0.0450 (16)0.0693 (18)−0.0078 (14)−0.0022 (15)0.0114 (14)
C90.0569 (17)0.0404 (15)0.0403 (14)0.0007 (13)−0.0041 (12)−0.0078 (11)
C100.064 (2)0.077 (2)0.085 (2)−0.024 (2)0.0075 (18)−0.0120 (19)
C110.103 (3)0.071 (2)0.0547 (18)0.001 (2)−0.025 (2)−0.0192 (17)
C120.112 (3)0.0453 (17)0.0533 (17)0.0220 (19)−0.0169 (19)−0.0043 (14)
C130.0370 (13)0.0429 (14)0.0373 (12)0.0088 (12)−0.0010 (10)−0.0008 (11)
C140.0466 (15)0.0557 (17)0.0520 (17)0.0031 (15)0.0024 (13)0.0057 (13)
C150.071 (2)0.087 (2)0.0443 (17)0.017 (2)0.0021 (16)0.0115 (16)
C160.073 (2)0.080 (2)0.0440 (15)0.022 (2)−0.0168 (15)−0.0116 (17)
C170.0516 (16)0.0634 (19)0.0594 (17)0.0085 (16)−0.0146 (15)−0.0173 (15)
C180.0428 (14)0.0472 (15)0.0489 (15)0.0021 (13)−0.0045 (12)−0.0064 (12)
S1—O11.464 (2)C8—H80.9300
S1—N11.682 (2)C9—C101.507 (4)
S1—C91.831 (3)C9—C121.516 (4)
S2—O31.4258 (18)C9—C111.532 (4)
S2—O21.4296 (19)C10—H10A0.9600
S2—C131.755 (2)C10—H10B0.9600
S2—C11.860 (3)C10—H10C0.9600
Cl1—C11.761 (2)C11—H11A0.9600
Cl2—C11.768 (2)C11—H11B0.9600
N1—C21.468 (3)C11—H11C0.9600
N1—H10.81 (3)C12—H12A0.9600
C1—C21.543 (3)C12—H12B0.9600
C2—C31.516 (3)C12—H12C0.9600
C2—H20.9800C13—C181.371 (4)
C3—C81.381 (4)C13—C141.385 (4)
C3—C41.382 (3)C14—C151.381 (4)
C4—C51.368 (4)C14—H140.9300
C4—H40.9300C15—C161.359 (5)
C5—C61.371 (4)C15—H150.9300
C5—H50.9300C16—C171.382 (5)
C6—C71.356 (5)C16—H160.9300
C6—H60.9300C17—C181.379 (4)
C7—C81.382 (4)C17—H170.9300
C7—H70.9300C18—H180.9300
O1—S1—N1109.91 (13)C10—C9—C12112.9 (3)
O1—S1—C9106.88 (15)C10—C9—C11110.9 (3)
N1—S1—C996.71 (11)C12—C9—C11110.1 (3)
O3—S2—O2119.92 (12)C10—C9—S1108.7 (2)
O3—S2—C13109.64 (12)C12—C9—S1110.2 (2)
O2—S2—C13108.03 (12)C11—C9—S1103.6 (2)
O3—S2—C1104.70 (11)C9—C10—H10A109.5
O2—S2—C1106.24 (11)C9—C10—H10B109.5
C13—S2—C1107.65 (11)H10A—C10—H10B109.5
C2—N1—S1112.80 (16)C9—C10—H10C109.5
C2—N1—H1115.1 (19)H10A—C10—H10C109.5
S1—N1—H1112.7 (19)H10B—C10—H10C109.5
C2—C1—Cl1113.30 (16)C9—C11—H11A109.5
C2—C1—Cl2108.97 (16)C9—C11—H11B109.5
Cl1—C1—Cl2109.45 (13)H11A—C11—H11B109.5
C2—C1—S2110.00 (16)C9—C11—H11C109.5
Cl1—C1—S2108.24 (12)H11A—C11—H11C109.5
Cl2—C1—S2106.66 (12)H11B—C11—H11C109.5
N1—C2—C3110.0 (2)C9—C12—H12A109.5
N1—C2—C1109.09 (18)C9—C12—H12B109.5
C3—C2—C1113.58 (19)H12A—C12—H12B109.5
N1—C2—H2108.0C9—C12—H12C109.5
C3—C2—H2108.0H12A—C12—H12C109.5
C1—C2—H2108.0H12B—C12—H12C109.5
C8—C3—C4118.5 (2)C18—C13—C14122.2 (2)
C8—C3—C2120.5 (2)C18—C13—S2119.0 (2)
C4—C3—C2121.1 (2)C14—C13—S2118.5 (2)
C5—C4—C3120.4 (2)C15—C14—C13117.7 (3)
C5—C4—H4119.8C15—C14—H14121.1
C3—C4—H4119.8C13—C14—H14121.1
C4—C5—C6120.7 (3)C16—C15—C14120.4 (3)
C4—C5—H5119.6C16—C15—H15119.8
C6—C5—H5119.6C14—C15—H15119.8
C7—C6—C5119.6 (3)C15—C16—C17121.6 (3)
C7—C6—H6120.2C15—C16—H16119.2
C5—C6—H6120.2C17—C16—H16119.2
C6—C7—C8120.4 (3)C18—C17—C16118.8 (3)
C6—C7—H7119.8C18—C17—H17120.6
C8—C7—H7119.8C16—C17—H17120.6
C3—C8—C7120.4 (3)C13—C18—C17119.2 (3)
C3—C8—H8119.8C13—C18—H18120.4
C7—C8—H8119.8C17—C18—H18120.4
O1—S1—N1—C2−72.4 (2)C4—C5—C6—C7−0.2 (4)
C9—S1—N1—C2176.92 (18)C5—C6—C7—C80.0 (5)
O3—S2—C1—C2−56.98 (18)C4—C3—C8—C7−1.8 (4)
O2—S2—C1—C270.87 (18)C2—C3—C8—C7179.8 (3)
C13—S2—C1—C2−173.60 (16)C6—C7—C8—C31.0 (5)
O3—S2—C1—Cl1178.74 (12)O1—S1—C9—C10−178.7 (2)
O2—S2—C1—Cl1−53.41 (15)N1—S1—C9—C10−65.5 (2)
C13—S2—C1—Cl162.12 (15)O1—S1—C9—C12−54.5 (2)
O3—S2—C1—Cl261.06 (14)N1—S1—C9—C1258.8 (2)
O2—S2—C1—Cl2−171.09 (12)O1—S1—C9—C1163.3 (2)
C13—S2—C1—Cl2−55.56 (15)N1—S1—C9—C11176.5 (2)
S1—N1—C2—C3−68.1 (2)O3—S2—C13—C18−17.1 (2)
S1—N1—C2—C1166.75 (16)O2—S2—C13—C18−149.4 (2)
Cl1—C1—C2—N158.3 (2)C1—S2—C13—C1896.3 (2)
Cl2—C1—C2—N1−179.58 (16)O3—S2—C13—C14156.5 (2)
S2—C1—C2—N1−63.0 (2)O2—S2—C13—C1424.2 (2)
Cl1—C1—C2—C3−64.7 (2)C1—S2—C13—C14−90.2 (2)
Cl2—C1—C2—C357.4 (2)C18—C13—C14—C15−1.6 (4)
S2—C1—C2—C3173.99 (16)S2—C13—C14—C15−174.9 (2)
N1—C2—C3—C8140.1 (2)C13—C14—C15—C160.9 (4)
C1—C2—C3—C8−97.3 (3)C14—C15—C16—C170.2 (5)
N1—C2—C3—C4−38.3 (3)C15—C16—C17—C18−0.7 (5)
C1—C2—C3—C484.2 (3)C14—C13—C18—C171.0 (4)
C8—C3—C4—C51.6 (4)S2—C13—C18—C17174.3 (2)
C2—C3—C4—C5−179.9 (2)C16—C17—C18—C130.1 (4)
C3—C4—C5—C6−0.7 (4)
D—H···AD—HH···AD···AD—H···A
C17—H17···O1i0.932.443.236 (4)144
N1—H1···O20.81 (3)2.19 (3)2.889 (3)145 (3)
N1—H1···S20.81 (3)2.72 (3)3.138 (2)114 (2)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
C17—H17⋯O1i 0.932.443.236 (4)144
N1—H1⋯O20.81 (3)2.19 (3)2.889 (3)145 (3)

Symmetry code: (i) .

  6 in total

1.  Highly diastereoselective synthesis of α-difluoromethyl amines from N-tert-butylsulfinyl ketimines and difluoromethyl phenyl sulfone.

Authors:  Jun Liu; Jinbo Hu
Journal:  Chemistry       Date:  2010-10-04       Impact factor: 5.236

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  Facile synthesis of chiral alpha-difluoromethyl amines from N-(tert-butylsulfinyl)aldimines.

Authors:  Ya Li; Jinbo Hu
Journal:  Angew Chem Int Ed Engl       Date:  2005-09-12       Impact factor: 15.336

4.  Practical and stereoselective synthesis of β-amino sulfones from alkyl phenyl sulfones and N-(tert-butylsulfinyl) aldimines.

Authors:  Hua Zhang; Ya Li; Wei Xu; Wenrui Zheng; Pei Zhou; Zhihua Sun
Journal:  Org Biomol Chem       Date:  2011-08-22       Impact factor: 3.876

5.  Combination of non-natural D-amino acid derivatives and allophenylnorstatine-dimethylthioproline scaffold in HIV protease inhibitors have high efficacy in mutant HIV.

Authors:  Shingo Nakatani; Koushi Hidaka; Ei'ichi Ami; Koichiro Nakahara; Akihiko Sato; Jeffrey-Tri Nguyen; Yoshio Hamada; Yasuko Hori; Nobuyuki Ohnishi; Akinori Nagai; Tooru Kimura; Yoshio Hayashi; Yoshiaki Kiso
Journal:  J Med Chem       Date:  2008-04-22       Impact factor: 7.446

6.  Reduction of peptide character of HIV protease inhibitors that exhibit nanomolar potency against multidrug resistant HIV-1 strains.

Authors:  Hirokazu Tamamura; Yasuhiro Koh; Satoshi Ueda; Yoshikazu Sasaki; Tomonori Yamasaki; Manabu Aoki; Kenji Maeda; Yoriko Watai; Hisashi Arikuni; Akira Otaka; Hiroaki Mitsuya; Nobutaka Fujii
Journal:  J Med Chem       Date:  2003-04-24       Impact factor: 7.446

  6 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.