Literature DB >> 24764655

Genetic variations in colorectal cancer risk and clinical outcome.

Kejin Zhang1, Jesse Civan1, Sushmita Mukherjee1, Fenil Patel1, Hushan Yang1.   

Abstract

Colorectal cancer (CRC) has an apparent hereditary component, as evidenced by the well-characterized genetic syndromes and family history associated with the increased risk of this disease. However, in a large fraction of CRC cases, no known genetic syndrome or family history can be identified, suggesting the presence of "missing heritability" in CRC etiology. The genome-wide association study (GWAS) platform has led to the identification of multiple replicable common genetic variants associated with CRC risk. These newly discovered genetic variations might account for a portion of the missing heritability. Here, we summarize the recent GWASs related to newly identified genetic variants associated with CRC risk and clinical outcome. The findings from these studies suggest that there is a lack of understanding of the mechanism of many single nucleotide polymorphisms (SNPs) that are associated with CRC. In addition, the utility of SNPs as prognostic markers of CRC in clinical settings remains to be further assessed. Finally, the currently validated SNPs explain only a small fraction of total heritability in complex-trait diseases like CRC. Thus, the "missing heritability" still needs to be explored further. Future epidemiological and functional investigations of these variants will add to our understanding of CRC pathogenesis, and may ultimately lead to individualized strategies for prevention and treatment of CRC.

Entities:  

Keywords:  Cell cycle control; Colorectal cancer; Gene desert; Genome instability; Genome-wide association study; Signal transduction pathways; Single nucleotide polymorphism

Mesh:

Year:  2014        PMID: 24764655      PMCID: PMC3989953          DOI: 10.3748/wjg.v20.i15.4167

Source DB:  PubMed          Journal:  World J Gastroenterol        ISSN: 1007-9327            Impact factor:   5.742


  73 in total

1.  GWAS-identified colorectal cancer susceptibility loci associated with clinical outcomes.

Authors:  Jingyao Dai; Jian Gu; Maosheng Huang; Cathy Eng; E Scott Kopetz; Lee M Ellis; Ernest Hawk; Xifeng Wu
Journal:  Carcinogenesis       Date:  2012-04-12       Impact factor: 4.944

2.  Common single-nucleotide polymorphisms in the estrogen receptor β promoter are associated with colorectal cancer survival in postmenopausal women.

Authors:  Michael N Passarelli; Amanda I Phipps; John D Potter; Karen W Makar; Anna E Coghill; Karen J Wernli; Emily White; Andrew T Chan; Carolyn M Hutter; Ulrike Peters; Polly A Newcomb
Journal:  Cancer Res       Date:  2012-11-13       Impact factor: 12.701

3.  Genome-wide association study identifies a second prostate cancer susceptibility variant at 8q24.

Authors:  Julius Gudmundsson; Patrick Sulem; Andrei Manolescu; Laufey T Amundadottir; Daniel Gudbjartsson; Agnar Helgason; Thorunn Rafnar; Jon T Bergthorsson; Bjarni A Agnarsson; Adam Baker; Asgeir Sigurdsson; Kristrun R Benediktsdottir; Margret Jakobsdottir; Jianfeng Xu; Thorarinn Blondal; Jelena Kostic; Jielin Sun; Shyamali Ghosh; Simon N Stacey; Magali Mouy; Jona Saemundsdottir; Valgerdur M Backman; Kristleifur Kristjansson; Alejandro Tres; Alan W Partin; Marjo T Albers-Akkers; Javier Godino-Ivan Marcos; Patrick C Walsh; Dorine W Swinkels; Sebastian Navarrete; Sarah D Isaacs; Katja K Aben; Theresa Graif; John Cashy; Manuel Ruiz-Echarri; Kathleen E Wiley; Brian K Suarez; J Alfred Witjes; Mike Frigge; Carole Ober; Eirikur Jonsson; Gudmundur V Einarsson; Jose I Mayordomo; Lambertus A Kiemeney; William B Isaacs; William J Catalona; Rosa B Barkardottir; Jeffrey R Gulcher; Unnur Thorsteinsdottir; Augustine Kong; Kari Stefansson
Journal:  Nat Genet       Date:  2007-04-01       Impact factor: 38.330

4.  Identification of polymorphisms in ultraconserved elements associated with clinical outcomes in locally advanced colorectal adenocarcinoma.

Authors:  Moubin Lin; Cathy Eng; Ernest T Hawk; Maosheng Huang; Jie Lin; Jian Gu; Lee M Ellis; Xifeng Wu
Journal:  Cancer       Date:  2012-06-06       Impact factor: 6.860

Review 5.  Identification of Genetic Susceptibility Loci for Colorectal Tumors in a Genome-Wide Meta-analysis.

Authors:  Ulrike Peters; Shuo Jiao; Fredrick R Schumacher; Carolyn M Hutter; Aaron K Aragaki; John A Baron; Sonja I Berndt; Stéphane Bézieau; Hermann Brenner; Katja Butterbach; Bette J Caan; Peter T Campbell; Christopher S Carlson; Graham Casey; Andrew T Chan; Jenny Chang-Claude; Stephen J Chanock; Lin S Chen; Gerhard A Coetzee; Simon G Coetzee; David V Conti; Keith R Curtis; David Duggan; Todd Edwards; Charles S Fuchs; Steven Gallinger; Edward L Giovannucci; Stephanie M Gogarten; Stephen B Gruber; Robert W Haile; Tabitha A Harrison; Richard B Hayes; Brian E Henderson; Michael Hoffmeister; John L Hopper; Thomas J Hudson; David J Hunter; Rebecca D Jackson; Sun Ha Jee; Mark A Jenkins; Wei-Hua Jia; Laurence N Kolonel; Charles Kooperberg; Sébastien Küry; Andrea Z Lacroix; Cathy C Laurie; Cecelia A Laurie; Loic Le Marchand; Mathieu Lemire; David Levine; Noralane M Lindor; Yan Liu; Jing Ma; Karen W Makar; Keitaro Matsuo; Polly A Newcomb; John D Potter; Ross L Prentice; Conghui Qu; Thomas Rohan; Stephanie A Rosse; Robert E Schoen; Daniela Seminara; Martha Shrubsole; Xiao-Ou Shu; Martha L Slattery; Darin Taverna; Stephen N Thibodeau; Cornelia M Ulrich; Emily White; Yongbing Xiang; Brent W Zanke; Yi-Xin Zeng; Ben Zhang; Wei Zheng; Li Hsu
Journal:  Gastroenterology       Date:  2012-12-22       Impact factor: 22.682

6.  Gender-specific profiling in SCN1A polymorphisms and time-to-recurrence in patients with stage II/III colorectal cancer treated with adjuvant 5-fluoruracil chemotherapy.

Authors:  L Benhaim; A Gerger; P Bohanes; D Paez; T Wakatsuki; D Yang; M J Labonte; Y Ning; R El-Khoueiry; F Loupakis; W Zhang; P Laurent-Puig; H J Lenz
Journal:  Pharmacogenomics J       Date:  2013-06-11       Impact factor: 3.550

7.  MTHFR Glu429Ala and ERCC5 His46His polymorphisms are associated with prognosis in colorectal cancer patients: analysis of two independent cohorts from Newfoundland.

Authors:  Amit A Negandhi; Angela Hyde; Elizabeth Dicks; William Pollett; Banfield H Younghusband; Patrick Parfrey; Roger C Green; Sevtap Savas
Journal:  PLoS One       Date:  2013-04-23       Impact factor: 3.240

8.  CCAT2, a novel noncoding RNA mapping to 8q24, underlies metastatic progression and chromosomal instability in colon cancer.

Authors:  Hui Ling; Riccardo Spizzo; Yaser Atlasi; Milena Nicoloso; Masayoshi Shimizu; Roxana S Redis; Naohiro Nishida; Roberta Gafà; Jian Song; Zhiyi Guo; Cristina Ivan; Elisa Barbarotto; Ingrid De Vries; Xinna Zhang; Manuela Ferracin; Mike Churchman; Janneke F van Galen; Berna H Beverloo; Maryam Shariati; Franziska Haderk; Marcos R Estecio; Guillermo Garcia-Manero; Gijs A Patijn; David C Gotley; Vikas Bhardwaj; Imad Shureiqi; Subrata Sen; Asha S Multani; James Welsh; Ken Yamamoto; Itsuki Taniguchi; Min-Ae Song; Steven Gallinger; Graham Casey; Stephen N Thibodeau; Loïc Le Marchand; Maarit Tiirikainen; Sendurai A Mani; Wei Zhang; Ramana V Davuluri; Koshi Mimori; Masaki Mori; Anieta M Sieuwerts; John W M Martens; Ian Tomlinson; Massimo Negrini; Ioana Berindan-Neagoe; John A Foekens; Stanley R Hamilton; Giovanni Lanza; Scott Kopetz; Riccardo Fodde; George A Calin
Journal:  Genome Res       Date:  2013-06-24       Impact factor: 9.043

9.  Genome-wide association analyses in East Asians identify new susceptibility loci for colorectal cancer.

Authors:  Wei-Hua Jia; Ben Zhang; Keitaro Matsuo; Aesun Shin; Yong-Bing Xiang; Sun Ha Jee; Dong-Hyun Kim; Zefang Ren; Qiuyin Cai; Jirong Long; Jiajun Shi; Wanqing Wen; Gong Yang; Ryan J Delahanty; Bu-Tian Ji; Zhi-Zhong Pan; Fumihiko Matsuda; Yu-Tang Gao; Jae Hwan Oh; Yoon-Ok Ahn; Eun Jung Park; Hong-Lan Li; Ji Won Park; Jaeseong Jo; Jin-Young Jeong; Satoyo Hosono; Graham Casey; Ulrike Peters; Xiao-Ou Shu; Yi-Xin Zeng; Wei Zheng
Journal:  Nat Genet       Date:  2012-12-23       Impact factor: 38.330

10.  Associations of beta-catenin alterations and MSI screening status with expression of key cell cycle regulating proteins and survival from colorectal cancer.

Authors:  Sakarias Wangefjord; Jenny Brändstedt; Kajsa Ericson Lindquist; Björn Nodin; Karin Jirström; Jakob Eberhard
Journal:  Diagn Pathol       Date:  2013-01-21       Impact factor: 2.644

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  15 in total

1.  Genetic Variation in CD166 Gene and Its Association with Bladder Cancer Risk in North Indian Population.

Authors:  Archana Verma; Rakesh Kapoor; Rama Devi Mittal
Journal:  Indian J Clin Biochem       Date:  2016-08-26

Review 2.  Epidemiology of colorectal cancer.

Authors:  Andrew R Marley; Hongmei Nan
Journal:  Int J Mol Epidemiol Genet       Date:  2016-09-30

3.  Colorectal cancer susceptibility loci as predictive markers of rectal cancer prognosis after surgery.

Authors:  Yue Hu; Jochen Gaedcke; Georg Emons; Tim Beissbarth; Marian Grade; Peter Jo; Meredith Yeager; Stephen J Chanock; Hendrik Wolff; Jordi Camps; B Michael Ghadimi; Thomas Ried
Journal:  Genes Chromosomes Cancer       Date:  2017-11-28       Impact factor: 5.006

4.  Polymorphism (rs16917496) at the miR-502 Binding Site of the Lysine Methyltransferase 5A (SET8) and Its Correlation with Colorectal Cancer in Iranians.

Authors:  Meysam Mosallayi; Miganoosh Simonian; Sharifeh Khosravi; Ahmad Reza Salehi; Mahsa Khodadoostan; Vahid Sebghatollahi; Azar Baradaran; Rasoul Salehi
Journal:  Adv Biomed Res       Date:  2017-07-14

5.  The role of pparγ and autophagy in ros production, lipid droplets biogenesis and its involvement with colorectal cancer cells modulation.

Authors:  José Antonio Fagundes Assumpção; Kelly Grace Magalhães; José Raimundo Corrêa
Journal:  Cancer Cell Int       Date:  2017-09-15       Impact factor: 5.722

6.  Risk of eighteen genome-wide association study-identified genetic variants for colorectal cancer and colorectal adenoma in Han Chinese.

Authors:  Chunwen Tan; Wangxiong Hu; Yanqin Huang; Jiaojiao Zhou; Shu Zheng
Journal:  Oncotarget       Date:  2016-11-22

7.  CYP1A1 Ile462Val polymorphism and colorectal cancer risk in Polish patients.

Authors:  Justyna Gil; Paweł Gaj; Błażej Misiak; Jerzy Ostrowski; Pawel Karpinski; Alicja Jarczyńska; Wojciech Kielan; Maria Malgorzata Sasiadek
Journal:  Med Oncol       Date:  2014-06-18       Impact factor: 3.064

Review 8.  Colorectal cancer, screening and primary care: A mini literature review.

Authors:  Athanasios Hadjipetrou; Dimitrios Anyfantakis; Christos G Galanakis; Miltiades Kastanakis; Serafim Kastanakis
Journal:  World J Gastroenterol       Date:  2017-09-07       Impact factor: 5.742

9.  NOTCH Single Nucleotide Polymorphisms in the Predisposition of Breast and Colorectal Cancers in Saudi Patients.

Authors:  Ibrahim O Alanazi; Jilani Purusottapatnam Shaik; Narasimha Reddy Parine; Abdulrahman Al Naeem; Nahla A Azzam; Majid A Almadi; Abdulrahman M Aljebreen; Othman Alharbi; Mohammad Saud Alanazi; Zahid Khan
Journal:  Pathol Oncol Res       Date:  2021-04-09       Impact factor: 3.201

10.  Correlation Between CASC8, SMAD7 Polymorphisms and the Susceptibility to Colorectal Cancer: An Updated Meta-Analysis Based on GWAS Results.

Authors:  Kunhou Yao; Long Hua; Lunshou Wei; Jiming Meng; Junhong Hu
Journal:  Medicine (Baltimore)       Date:  2015-11       Impact factor: 1.817

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