Literature DB >> 24761126

BAYESIAN WAVELET-BASED CURVE CLASSIFICATION VIA DISCRIMINANT ANALYSIS WITH MARKOV RANDOM TREE PRIORS.

Francesco C Stingo1, Marina Vannucci2, Gerard Downey3.   

Abstract

Discriminant analysis is an effective tool for the classification of experimental units into groups. When the number of variables is much larger than the number of observations it is necessary to include a dimension reduction procedure into the inferential process. Here we present a typical example from chemometrics that deals with the classification of different types of food into species via near infrared spectroscopy. We take a nonparametric approach by modeling the functional predictors via wavelet transforms and then apply discriminant analysis in the wavelet domain. We consider a Bayesian conjugate normal discriminant model, either linear or quadratic, that avoids independence assumptions among the wavelet coefficients. We introduce latent binary indicators for the selection of the discriminatory wavelet coefficients and propose prior formulations that use Markov random tree (MRT) priors to map scale-location connections among wavelets coefficients. We conduct posterior inference via MCMC methods, we show performances on our case study on food authenticity and compare results to several other procedures..

Entities:  

Keywords:  Bayesian variable selection; Classification and pattern recognition; Markov chain Monte Carlo; Markov random tree prior; Wavelet-based modeling

Year:  2012        PMID: 24761126      PMCID: PMC3993008          DOI: 10.5705/ss.2010.141

Source DB:  PubMed          Journal:  Stat Sin        ISSN: 1017-0405            Impact factor:   1.261


  4 in total

1.  Bayesian variable selection in multinomial probit models to identify molecular signatures of disease stage.

Authors:  Naijun Sha; Marina Vannucci; Mahlet G Tadesse; Philip J Brown; Ilaria Dragoni; Nick Davies; Tracy C Roberts; Andrea Contestabile; Mike Salmon; Chris Buckley; Francesco Falciani
Journal:  Biometrics       Date:  2004-09       Impact factor: 2.571

2.  Detecting differential gene expression with a semiparametric hierarchical mixture method.

Authors:  Michael A Newton; Amine Noueiry; Deepayan Sarkar; Paul Ahlquist
Journal:  Biostatistics       Date:  2004-04       Impact factor: 5.899

3.  Wavelet-based functional mixed models.

Authors:  Jeffrey S Morris; Raymond J Carroll
Journal:  J R Stat Soc Series B Stat Methodol       Date:  2006-04-01       Impact factor: 4.488

4.  Variable Selection and Updating In Model-Based Discriminant Analysis for High Dimensional Data with Food Authenticity Applications.

Authors:  Thomas Brendan Murphy; Nema Dean; Adrian E Raftery
Journal:  Ann Appl Stat       Date:  2010-03-01       Impact factor: 2.083

  4 in total
  3 in total

1.  A spatio-temporal nonparametric Bayesian variable selection model of fMRI data for clustering correlated time courses.

Authors:  Linlin Zhang; Michele Guindani; Francesco Versace; Marina Vannucci
Journal:  Neuroimage       Date:  2014-03-18       Impact factor: 6.556

2.  An Integrative Bayesian Modeling Approach to Imaging Genetics.

Authors:  Francesco C Stingo; Michele Guindani; Marina Vannucci; Vince D Calhoun
Journal:  J Am Stat Assoc       Date:  2013-01-01       Impact factor: 5.033

3.  Model-based clustering based on sparse finite Gaussian mixtures.

Authors:  Gertraud Malsiner-Walli; Sylvia Frühwirth-Schnatter; Bettina Grün
Journal:  Stat Comput       Date:  2014-08-26       Impact factor: 2.559

  3 in total

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