Literature DB >> 24749883

DNA fingerprinting: a quality control case study for human biospecimen authentication.

Olga A Kofanova1, William Mathieson, Gerry A Thomas, Fotini Betsou.   

Abstract

This case study illustrates the usefulness of the DNA fingerprinting method in biobank quality control (QC) procedures and emphasizes the need for detailed and accurate record keeping during processing of biological samples. It also underlines the value of independent third-party assessment to identify points at which errors are most likely to have occurred when unexpected results are obtained from biospecimens.

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Year:  2014        PMID： 24749883      PMCID： PMC3995361          DOI： 10.1089/bio.2013.0063

Source DB:  PubMed          Journal:  Biopreserv Biobank        ISSN： 1947-5543            Impact factor:   2.300


  13 in total

1.  Cross-contamination: HS-Sultan is not a myeloma but a Burkitt lymphoma cell line.

Authors:  H G Drexler; R A MacLeod; W G Dirks
Journal:  Blood       Date:  2001-12-01       Impact factor: 22.113

Review 2.  Cell line misidentification: the beginning of the end.

Authors: 
Journal:  Nat Rev Cancer       Date:  2010-05-07       Impact factor: 60.716

3.  Standard preanalytical coding for biospecimens: defining the sample PREanalytical code.

Authors:  Fotini Betsou; Sylvain Lehmann; Garry Ashton; Michael Barnes; Erica E Benson; Domenico Coppola; Yvonne DeSouza; James Eliason; Barbara Glazer; Fiorella Guadagni; Keith Harding; David J Horsfall; Cynthia Kleeberger; Umberto Nanni; Anil Prasad; Kathi Shea; Amy Skubitz; Stella Somiari; Elaine Gunter
Journal:  Cancer Epidemiol Biomarkers Prev       Date:  2010-03-23       Impact factor: 4.254

4.  A reliable and reproducible technique for DNA fingerprinting in biorepositories: a pilot study from BioBIM.

Authors:  Raffaele Palmirotta; Maria Laura De Marchis; Giorgia Ludovici; Cristiano Ialongo; Barbara Leone; Nadia Lopez; Maria Giovanna Valente; Antonella Spila; Patrizia Ferroni; David Della-Morte; Fiorella Guadagni
Journal:  Int J Biol Markers       Date:  2013-12-17       Impact factor: 2.659

5.  The current state of cell contamination and authentication-and what it means for biobanks.

Authors:  Yvonne Reid; Joe Mintzer
Journal:  Biopreserv Biobank       Date:  2012-06       Impact factor: 2.300

6.  Absence of HeLa cell contamination in 169 cell lines derived from human tumors.

Authors:  J Fogh; W C Wright; J D Loveless
Journal:  J Natl Cancer Inst       Date:  1977-02       Impact factor: 13.506

Review 7.  Improving human forensics through advances in genetics, genomics and molecular biology.

Authors:  Manfred Kayser; Peter de Knijff
Journal:  Nat Rev Genet       Date:  2011-03       Impact factor: 53.242

8.  Verification and unmasking of widely used human esophageal adenocarcinoma cell lines.

Authors:  Jurjen J Boonstra; Ronald van Marion; David G Beer; Lin Lin; Paula Chaves; Catarina Ribeiro; A Dias Pereira; Lúcia Roque; S Jane Darnton; Nasser K Altorki; David S Schrump; David S Klimstra; Laura H Tang; James R Eshleman; Hector Alvarez; Yutaka Shimada; Herman van Dekken; Hugo W Tilanus; Winand N M Dinjens
Journal:  J Natl Cancer Inst       Date:  2010-01-14       Impact factor: 13.506

9.  Authentication of scientific human cell lines: easy-to-use DNA fingerprinting.

Authors:  Wilhelm G Dirks; Hans G Drexler
Journal:  Methods Mol Biol       Date:  2005

Review 10.  Current genetic methodologies in the identification of disaster victims and in forensic analysis.

Authors:  Ewa Ziętkiewicz; Magdalena Witt; Patrycja Daca; Jadwiga Zebracka-Gala; Mariusz Goniewicz; Barbara Jarząb; Michał Witt
Journal:  J Appl Genet       Date:  2011-10-15       Impact factor: 3.240
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  6 in total

1.  Evaluation genotypes of cancer cell lines HCC1954 and SiHa by short tandem repeat (STR) analysis and DNA sequencing.

Authors:  Jiewen Fu; Jingliang Cheng; Xiaoyan Liu; Jun Li; Chunli Wei; Xiaoli Zheng; Tao He; Junjiang Fu
Journal:  Mol Biol Rep       Date:  2018-11-02       Impact factor: 2.316

2.  Clinical biospecimens: reference materials, certified for nominal properties?

Authors:  Fay Betsou
Journal:  Biopreserv Biobank       Date:  2014-04       Impact factor: 2.300

3.  Sample Confirmation Testing: A Short Tandem Repeat-Based Quality Assurance and Quality Control Procedure for the eyeGENE Biorepository.

Authors:  Rebecca S Parrish; Alexandra V Garafalo; Vida Ndifor; Kerry E Goetz; Melissa J Reeves; Annette Yim; Remy C Cooper; Jemma Iano-Fletcher; Xinjing Wang; Santa J Tumminia
Journal:  Biopreserv Biobank       Date:  2016-02-18       Impact factor: 2.300

Review 4.  Quality Assurance in Biobanking for Pre-Clinical Research.

Authors:  Daniel Simeon-Dubach; Steffen M Zeisberger; Simon P Hoerstrup
Journal:  Transfus Med Hemother       Date:  2016-09-17       Impact factor: 3.747

5.  Impact of Specimen Heterogeneity on Biomarkers in Repository Samples from Patients with Acute Myeloid Leukemia: A SWOG Report.

Authors:  Era L Pogosova-Agadjanyan; Anna Moseley; Megan Othus; Frederick R Appelbaum; Thomas R Chauncey; I-Ming L Chen; Harry P Erba; John E Godwin; Min Fang; Kenneth J Kopecky; Alan F List; Galina L Pogosov; Jerald P Radich; Cheryl L Willman; Brent L Wood; Soheil Meshinchi; Derek L Stirewalt
Journal:  Biopreserv Biobank       Date:  2017-11-27       Impact factor: 2.256

6.  Rapid detection of low-level HeLa cell contamination in cell culture using nested PCR.

Authors:  Jun Lin; Lin Chen; Wenqian Jiang; Huilian Zhang; Yang Shi; Weiwen Cai
Journal:  J Cell Mol Med       Date:  2018-10-24       Impact factor: 5.310
  6 in total

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