Literature DB >> 24740220

mRNA and microRNA purity and integrity: the key to success in expression profiling.

Benedikt Kirchner1, Vijay Paul, Irmgard Riedmaier, Michael W Pfaffl.   

Abstract

RNA quality control is a crucial step in guaranteeing integer nondegraded RNA and receiving meaningful results in gene expression profiling experiments, using micro-array, RT-qPCR (Reverse-Transcription quantitative PCR), or Next-Generation-Sequencing by RNA-Seq or small-RNA Seq. Therefore, assessment of RNA integrity and purity is very essential prior to gene expression analysis of sample RNA to ensure the accuracy of any downstream applications. RNA samples should be nondegraded or fragmented and free of protein, genomic DNA, nucleases, and enzymatic inhibitors. Herein we describe the current state-of-the-art RNA quality assessment by combining UV/Vis spectrophotometry and microfluidic capillary electrophoresis.

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Year:  2014        PMID: 24740220     DOI: 10.1007/978-1-4939-0733-5_5

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  5 in total

1.  Purification of high-quality RNA from synthetic polyethylene glycol-based hydrogels.

Authors:  Alexander Gasparian; Leily Daneshian; Hao Ji; Esmaiel Jabbari; Michael Shtutman
Journal:  Anal Biochem       Date:  2015-05-08       Impact factor: 3.365

Review 2.  Data Normalization Strategies for MicroRNA Quantification.

Authors:  Heidi Schwarzenbach; Andreia Machado da Silva; George Calin; Klaus Pantel
Journal:  Clin Chem       Date:  2015-09-25       Impact factor: 8.327

3.  A PCR-based quantitative assay for the evaluation of mRNA integrity in rat samples.

Authors:  Bhaja K Padhi; Manjeet Singh; Marianela Rosales; Guillaume Pelletier; Sabit Cakmak
Journal:  Biomol Detect Quantif       Date:  2018-03-16

Review 4.  Technological Challenges and Future Issues for the Detection of Circulating MicroRNAs in Patients With Cancer.

Authors:  Jean Cacheux; Aurélien Bancaud; Thierry Leichlé; Pierre Cordelier
Journal:  Front Chem       Date:  2019-11-28       Impact factor: 5.221

5.  Sampling Adipose and Muscle Tissue following Post-Harvest Scalding Does Not Affect RNA Integrity or Real-Time PCR Results in Market Weight Yorkshire Pigs.

Authors:  Amy E Bohan; Katelyn N Purvis; Jason T Sawyer; Werner G Bergen; Terry D Brandebourg
Journal:  Foods       Date:  2022-06-14
  5 in total

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