Literature DB >> 24737891

Nature's toolkit for microbial rhodopsin ion pumps.

Oded Béjà1, Janos K Lanyi.   

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Year:  2014        PMID： 24737891      PMCID： PMC4020099          DOI： 10.1073/pnas.1405093111

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN： 0027-8424            Impact factor:   11.205


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  27 in total

1.  Proteorhodopsin phototrophy in the ocean.

Authors:  O Béjà; E N Spudich; J L Spudich; M Leclerc; E F DeLong
Journal:  Nature       Date:  2001-06-14       Impact factor: 49.962

2.  Bacterial rhodopsin: evidence for a new type of phototrophy in the sea.

Authors:  O Béjà; L Aravind; E V Koonin; M T Suzuki; A Hadd; L P Nguyen; S B Jovanovich; C M Gates; R A Feldman; J L Spudich; E N Spudich; E F DeLong
Journal:  Science       Date:  2000-09-15       Impact factor: 47.728

3.  Retinal proteins - you can teach an old dog new tricks.

Authors:  Joachim Heberle; Xavier Deupi; Gebhard Schertler
Journal:  Biochim Biophys Acta       Date:  2014-02-25

4.  Functional characterization of flavobacteria rhodopsins reveals a unique class of light-driven chloride pump in bacteria.

Authors:  Susumu Yoshizawa; Yohei Kumagai; Hana Kim; Yoshitoshi Ogura; Tetsuya Hayashi; Wataru Iwasaki; Edward F DeLong; Kazuhiro Kogure
Journal:  Proc Natl Acad Sci U S A       Date:  2014-03-31       Impact factor: 11.205

5.  Light stimulates growth of proteorhodopsin-containing marine Flavobacteria.

Authors:  Laura Gómez-Consarnau; José M González; Montserrat Coll-Lladó; Pontus Gourdon; Torbjörn Pascher; Richard Neutze; Carlos Pedrós-Alió; Jarone Pinhassi
Journal:  Nature       Date:  2007-01-11       Impact factor: 49.962

6.  Xanthorhodopsin: a proton pump with a light-harvesting carotenoid antenna.

Authors:  Sergei P Balashov; Eleonora S Imasheva; Vladimir A Boichenko; Josefa Antón; Jennifer M Wang; Janos K Lanyi
Journal:  Science       Date:  2005-09-23       Impact factor: 47.728

7.  Chloride and proton transport in bacteriorhodopsin mutant D85T: different modes of ion translocation in a retinal protein.

Authors:  J Tittor; U Haupts; C Haupts; D Oesterhelt; A Becker; E Bamberg
Journal:  J Mol Biol       Date:  1997-08-22       Impact factor: 5.469

8.  Environmental genome shotgun sequencing of the Sargasso Sea.

Authors:  J Craig Venter; Karin Remington; John F Heidelberg; Aaron L Halpern; Doug Rusch; Jonathan A Eisen; Dongying Wu; Ian Paulsen; Karen E Nelson; William Nelson; Derrick E Fouts; Samuel Levy; Anthony H Knap; Michael W Lomas; Ken Nealson; Owen White; Jeremy Peterson; Jeff Hoffman; Rachel Parsons; Holly Baden-Tillson; Cynthia Pfannkoch; Yu-Hui Rogers; Hamilton O Smith
Journal:  Science       Date:  2004-03-04       Impact factor: 47.728

9.  Conversion of bacteriorhodopsin into a chloride ion pump.

Authors:  J Sasaki; L S Brown; Y S Chon; H Kandori; A Maeda; R Needleman; J K Lanyi
Journal:  Science       Date:  1995-07-07       Impact factor: 47.728

10.  Genomes of "Spiribacter", a streamlined, successful halophilic bacterium.

Authors:  Mario López-Pérez; Rohit Ghai; Maria Jose Leon; Ángel Rodríguez-Olmos; José Luis Copa-Patiño; Juan Soliveri; Cristina Sanchez-Porro; Antonio Ventosa; Francisco Rodriguez-Valera
Journal:  BMC Genomics       Date:  2013-11-13       Impact factor: 3.969
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  18 in total

1.  Diversity, Mechanism, and Optogenetic Application of Light-Driven Ion Pump Rhodopsins.

Authors:  Keiichi Inoue
Journal:  Adv Exp Med Biol       Date:  2021       Impact factor: 2.622

2.  acI Actinobacteria Assemble a Functional Actinorhodopsin with Natively Synthesized Retinal.

Authors:  Jeffrey R Dwulit-Smith; Joshua J Hamilton; David M Stevenson; Shaomei He; Ben O Oyserman; Francisco Moya-Flores; Sarahi L Garcia; Daniel Amador-Noguez; Katherine D McMahon; Katrina T Forest
Journal:  Appl Environ Microbiol       Date:  2018-11-30       Impact factor: 4.792

Review 3.  Marine Bacterial and Archaeal Ion-Pumping Rhodopsins: Genetic Diversity, Physiology, and Ecology.

Authors:  Jarone Pinhassi; Edward F DeLong; Oded Béjà; José M González; Carlos Pedrós-Alió
Journal:  Microbiol Mol Biol Rev       Date:  2016-09-14       Impact factor: 11.056

Review 4.  Conversion of microbial rhodopsins: insights into functionally essential elements and rational protein engineering.

Authors:  Akimasa Kaneko; Keiichi Inoue; Keiichi Kojima; Hideki Kandori; Yuki Sudo
Journal:  Biophys Rev       Date:  2017-11-25

5.  The crystal structures of a chloride-pumping microbial rhodopsin and its proton-pumping mutant illuminate proton transfer determinants.

Authors:  Jessica E Besaw; Wei-Lin Ou; Takefumi Morizumi; Bryan T Eger; Juan D Sanchez Vasquez; Jessica H Y Chu; Andrew Harris; Leonid S Brown; R J Dwayne Miller; Oliver P Ernst
Journal:  J Biol Chem       Date:  2020-07-23       Impact factor: 5.157

6.  Carotenoid binding in Gloeobacteria rhodopsin provides insights into divergent evolution of xanthorhodopsin types.

Authors:  Kimleng Chuon; Jin-Gon Shim; Kun-Wook Kang; Shin-Gyu Cho; Chenda Hour; Seanghun Meas; Ji-Hyun Kim; Ahreum Choi; Kwang-Hwan Jung
Journal:  Commun Biol       Date:  2022-05-30

7.  Analysis of cbbL, nifH, and pufLM in Soils from the Sør Rondane Mountains, Antarctica, Reveals a Large Diversity of Autotrophic and Phototrophic Bacteria.

Authors:  Guillaume Tahon; Bjorn Tytgat; Pieter Stragier; Anne Willems
Journal:  Microb Ecol       Date:  2015-11-19       Impact factor: 4.552

8.  Genome Sequence and Transcriptome Analyses of Chrysochromulina tobin: Metabolic Tools for Enhanced Algal Fitness in the Prominent Order Prymnesiales (Haptophyceae).

Authors:  Blake T Hovde; Chloe R Deodato; Heather M Hunsperger; Scott A Ryken; Will Yost; Ramesh K Jha; Johnathan Patterson; Raymond J Monnat; Steven B Barlow; Shawn R Starkenburg; Rose Ann Cattolico
Journal:  PLoS Genet       Date:  2015-09-23       Impact factor: 5.917

9.  Light-driven Na(+) pump from Gillisia limnaea: a high-affinity Na(+) binding site is formed transiently in the photocycle.

Authors:  Sergei P Balashov; Eleonora S Imasheva; Andrei K Dioumaev; Jennifer M Wang; Kwang-Hwan Jung; Janos K Lanyi
Journal:  Biochemistry       Date:  2014-11-24       Impact factor: 3.162

Review 10.  Ion-pumping microbial rhodopsins.

Authors:  Hideki Kandori
Journal:  Front Mol Biosci       Date:  2015-09-22
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