Literature DB >> 24736548

Forensic genomics as a novel tool for identifying the causes of mass mortality events.

Pierre De Wit1, Laura Rogers-Bennett2, Raphael M Kudela3, Stephen R Palumbi4.   

Abstract

Toxic spills, hypoxia, disease outbreaks and toxin-producing algal blooms are all possible causes of mass mortality events, but in many cases it can be difficult to pinpoint the cause of death. Here we present a new approach that we name 'forensic genomics', combining field surveys, toxin testing and genomic scans. Forensic genomics queries allele frequencies of surviving animals for signatures of agents causing mass mortality and, where genetic diversity is high, is uniquely suited to identify natural selection in action. As a proof of concept, we use this approach to investigate the causes of an invertebrate mass mortality event, and its genetic effects on an abalone population. Our results support that a harmful algal bloom producing a yessotoxin was a major causative agent to the event.

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Year:  2014        PMID: 24736548     DOI: 10.1038/ncomms4652

Source DB:  PubMed          Journal:  Nat Commun        ISSN: 2041-1723            Impact factor:   14.919


  10 in total

1.  Evolution caused by extreme events.

Authors:  Peter R Grant; B Rosemary Grant; Raymond B Huey; Marc T J Johnson; Andrew H Knoll; Johanna Schmitt
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2017-06-19       Impact factor: 6.237

2.  Experimental evolution reveals the synergistic genomic mechanisms of adaptation to ocean warming and acidification in a marine copepod.

Authors:  Reid S Brennan; James A deMayo; Hans G Dam; Michael Finiguerra; Hannes Baumann; Vince Buffalo; Melissa H Pespeni
Journal:  Proc Natl Acad Sci U S A       Date:  2022-09-12       Impact factor: 12.779

3.  Patterns of Mass Mortality among Rocky Shore Invertebrates across 100 km of Northeastern Pacific Coastline.

Authors:  Laura J Jurgens; Laura Rogers-Bennett; Peter T Raimondi; Lauren M Schiebelhut; Michael N Dawson; Richard K Grosberg; Brian Gaylord
Journal:  PLoS One       Date:  2015-06-03       Impact factor: 3.240

4.  Brain transcriptomes of harbor seals demonstrate gene expression patterns of animals undergoing a metabolic disease and a viral infection.

Authors:  Stephanie M Rosales; Rebecca L Vega Thurber
Journal:  PeerJ       Date:  2016-12-22       Impact factor: 2.984

Review 5.  Solid Phase Adsorption Toxin Tracking (SPATT) Technology for the Monitoring of Aquatic Toxins: A Review.

Authors:  Mélanie Roué; Hélène Taiana Darius; Mireille Chinain
Journal:  Toxins (Basel)       Date:  2018-04-20       Impact factor: 4.546

Review 6.  Lipophilic Toxins in Chile: History, Producers and Impacts.

Authors:  Patricio A Díaz; Gonzalo Álvarez; Gemita Pizarro; Juan Blanco; Beatriz Reguera
Journal:  Mar Drugs       Date:  2022-02-04       Impact factor: 5.118

7.  Advancing the protection of marine life through genomics.

Authors:  Madeleine J H van Oppen; Melinda A Coleman
Journal:  PLoS Biol       Date:  2022-10-17       Impact factor: 9.593

8.  Selection on oxidative phosphorylation and ribosomal structure as a multigenerational response to ocean acidification in the common copepod Pseudocalanus acuspes.

Authors:  Pierre De Wit; Sam Dupont; Peter Thor
Journal:  Evol Appl       Date:  2015-11-23       Impact factor: 5.183

9.  Local oceanographic variability influences the performance of juvenile abalone under climate change.

Authors:  C A Boch; F Micheli; M AlNajjar; S G Monismith; J M Beers; J C Bonilla; A M Espinoza; L Vazquez-Vera; C B Woodson
Journal:  Sci Rep       Date:  2018-04-03       Impact factor: 4.379

10.  Standing genetic variation fuels rapid adaptation to ocean acidification.

Authors:  M C Bitter; L Kapsenberg; J-P Gattuso; C A Pfister
Journal:  Nat Commun       Date:  2019-12-20       Impact factor: 14.919

  10 in total

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