Literature DB >> 24731505

Marine metaproteomics: deciphering the microbial metabolic food web.

Timothy J Williams1, Ricardo Cavicchioli2.   

Abstract

Metaproteomics can be applied to marine systems to discover metabolic processes in the ocean. This review describes current breakthroughs regarding marine microbes in the areas of microbial procurement of nutrients, important and previously unrecognized metabolic processes, functional roles for proteins with previously unknown functions, and intricate networks of metabolic interactions between symbiotic microbes and their hosts. By recognizing that metaproteomics empowers our understanding of the roles that marine microbes play in global biogeochemical cycles, the achievements to date from this advancing field highlight the enormous potential that the future holds. Crown
Copyright © 2014. Published by Elsevier Ltd. All rights reserved.

Keywords:  ecophysiology; marine ecology; marine microbiology; marine nutrient cycle; metagenomics; proteomics

Mesh：

Substances：

Year:  2014        PMID： 24731505     DOI： 10.1016/j.tim.2014.03.004

Source DB:  PubMed          Journal:  Trends Microbiol        ISSN： 0966-842X            Impact factor:   17.079


  17 in total

1.  A previously uncharacterized, nonphotosynthetic member of the Chromatiaceae is the primary CO2-fixing constituent in a self-regenerating biocathode.

Authors:  Zheng Wang; Dagmar H Leary; Anthony P Malanoski; Robert W Li; W Judson Hervey; Brian J Eddie; Gabrielle S Tender; Shelley G Yanosky; Gary J Vora; Leonard M Tender; Baochuan Lin; Sarah M Strycharz-Glaven
Journal:  Appl Environ Microbiol       Date:  2014-11-14       Impact factor: 4.792

2.  An Aquatic Microbial Metaproteomics Workflow: From Cells to Tryptic Peptides Suitable for Tandem Mass Spectrometry-based Analysis.

Authors:  David Colatriano; David A Walsh
Journal:  J Vis Exp       Date:  2015-09-15       Impact factor: 1.355

Review 3.  Microbial ecology of Antarctic aquatic systems.

Authors:  Ricardo Cavicchioli
Journal:  Nat Rev Microbiol       Date:  2015-10-12       Impact factor: 60.633

4.  Ecophysiological Distinctions of Haloarchaea from a Hypersaline Antarctic Lake as Determined by Metaproteomics.

Authors:  Bernhard Tschitschko; Timothy J Williams; Michelle A Allen; Ling Zhong; Mark J Raftery; Ricardo Cavicchioli
Journal:  Appl Environ Microbiol       Date:  2016-05-16       Impact factor: 4.792

5.  Insights into Diversity and Imputed Metabolic Potential of Bacterial Communities in the Continental Shelf of Agatti Island.

Authors:  Shreyas V Kumbhare; Dhiraj P Dhotre; Sunil Kumar Dhar; Kunal Jani; Deepak A Apte; Yogesh S Shouche; Avinash Sharma
Journal:  PLoS One       Date:  2015-06-11       Impact factor: 3.240

6.  A Metaproteomic Analysis of the Response of a Freshwater Microbial Community under Nutrient Enrichment.

Authors:  David A Russo; Narciso Couto; Andrew P Beckerman; Jagroop Pandhal
Journal:  Front Microbiol       Date:  2016-08-03       Impact factor: 5.640

7.  Dominant bacterial phyla in caves and their predicted functional roles in C and N cycle.

Authors:  Surajit De Mandal; Raghunath Chatterjee; Nachimuthu Senthil Kumar
Journal:  BMC Microbiol       Date:  2017-04-11       Impact factor: 3.605

8.  Tripartite ATP-independent Periplasmic (TRAP) Transporters Use an Arginine-mediated Selectivity Filter for High Affinity Substrate Binding.

Authors:  Marcus Fischer; Adam P Hopkins; Emmanuele Severi; Judith Hawkhead; Daniel Bawdon; Andrew G Watts; Roderick E Hubbard; Gavin H Thomas
Journal:  J Biol Chem       Date:  2015-09-05       Impact factor: 5.157

9.  Proteomic Stable Isotope Probing Reveals Taxonomically Distinct Patterns in Amino Acid Assimilation by Coastal Marine Bacterioplankton.

Authors:  Samuel Bryson; Zhou Li; Jennifer Pett-Ridge; Robert L Hettich; Xavier Mayali; Chongle Pan; Ryan S Mueller
Journal:  mSystems       Date:  2016-04-26       Impact factor: 6.496

Review 10.  Environmental Microbial Community Proteomics: Status, Challenges and Perspectives.

Authors:  Da-Zhi Wang; Ling-Fen Kong; Yuan-Yuan Li; Zhang-Xian Xie
Journal:  Int J Mol Sci       Date:  2016-08-05       Impact factor: 5.923
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