Literature DB >> 24731280

Structural characterization of P1'-diversified urea-based inhibitors of glutamate carboxypeptidase II.

Jiri Pavlicek1, Jakub Ptacek1, Jiri Cerny1, Youngjoo Byun2, Lubica Skultetyova1, Martin G Pomper3, Jacek Lubkowski4, Cyril Barinka5.   

Abstract

Urea-based inhibitors of human glutamate carboxypeptidase II (GCPII) have advanced into clinical trials for imaging metastatic prostate cancer. In parallel efforts, agents with increased lipophilicity have been designed and evaluated for targeting GCPII residing within the neuraxis. Here we report the structural and computational characterization of six complexes between GCPII and P1'-diversified urea-based inhibitors that have the C-terminal glutamate replaced by more hydrophobic moieties. The X-ray structures are complemented by quantum mechanics calculations that provide a quantitative insight into the GCPII/inhibitor interactions. These data can be used for the rational design of novel glutamate-free GCPII inhibitors with tailored physicochemical properties.
Copyright © 2014 Elsevier Ltd. All rights reserved.

Entities:  

Keywords:  GCPII; Metallopeptidase; PSMA; Prostate-specific membrane antigen; Structure-based drug design; Urea-based inhibitor; X-ray crystallography

Mesh:

Substances:

Year:  2014        PMID: 24731280      PMCID: PMC4077459          DOI: 10.1016/j.bmcl.2014.03.066

Source DB:  PubMed          Journal:  Bioorg Med Chem Lett        ISSN: 0960-894X            Impact factor:   2.823


  39 in total

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Authors:  Alexander W Schüttelkopf; Daan M F van Aalten
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2004-07-21

Review 2.  Glutamate carboxypeptidase II: an overview of structural studies and their importance for structure-based drug design and deciphering the reaction mechanism of the enzyme.

Authors:  J Pavlícek; J Ptácek; C Barinka
Journal:  Curr Med Chem       Date:  2012       Impact factor: 4.530

Review 3.  Glutamate in CNS neurodegeneration and cognition and its regulation by GCPII inhibition.

Authors:  K A Rahn; B S Slusher; A I Kaplin
Journal:  Curr Med Chem       Date:  2012       Impact factor: 4.530

4.  Density functional theory augmented with an empirical dispersion term. Interaction energies and geometries of 80 noncovalent complexes compared with ab initio quantum mechanics calculations.

Authors:  Petr Jurecka; Jirí Cerný; Pavel Hobza; Dennis R Salahub
Journal:  J Comput Chem       Date:  2007-01-30       Impact factor: 3.376

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Journal:  Nat Med       Date:  1999-12       Impact factor: 53.440

6.  68Ga-labeled inhibitors of prostate-specific membrane antigen (PSMA) for imaging prostate cancer.

Authors:  Sangeeta Ray Banerjee; Mrudula Pullambhatla; Youngjoo Byun; Sridhar Nimmagadda; Gilbert Green; James J Fox; Andrew Horti; Ronnie C Mease; Martin G Pomper
Journal:  J Med Chem       Date:  2010-07-22       Impact factor: 7.446

7.  Interactions between human glutamate carboxypeptidase II and urea-based inhibitors: structural characterization.

Authors:  Cyril Barinka; Youngjoo Byun; Crystal L Dusich; Sangeeta R Banerjee; Ying Chen; Mark Castanares; Alan P Kozikowski; Ronnie C Mease; Martin G Pomper; Jacek Lubkowski
Journal:  J Med Chem       Date:  2008-12-25       Impact factor: 7.446

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Authors:  P Emsley; B Lohkamp; W G Scott; K Cowtan
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2010-03-24

9.  Structural basis of interactions between human glutamate carboxypeptidase II and its substrate analogs.

Authors:  Cyril Barinka; Klara Hlouchova; Miroslava Rovenska; Pavel Majer; Miroslawa Dauter; Niyada Hin; Yao-Sen Ko; Takashi Tsukamoto; Barbara S Slusher; Jan Konvalinka; Jacek Lubkowski
Journal:  J Mol Biol       Date:  2008-01-05       Impact factor: 5.469

10.  Structural insight into the pharmacophore pocket of human glutamate carboxypeptidase II.

Authors:  Cyril Barinka; Miroslava Rovenská; Petra Mlcochová; Klára Hlouchová; Anna Plechanovová; Pavel Majer; Takashi Tsukamoto; Barbara S Slusher; Jan Konvalinka; Jacek Lubkowski
Journal:  J Med Chem       Date:  2007-06-14       Impact factor: 7.446

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  6 in total

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Authors:  Olena Poretska; Saiqi Yang; Delphine Pitorre; Wilfried Rozhon; Karin Zwerger; Marcos Castellanos Uribe; Sean May; Peter McCourt; Brigitte Poppenberger; Tobias Sieberer
Journal:  Plant Physiol       Date:  2016-05-03       Impact factor: 8.340

2.  2-Aminoadipic Acid-C(O)-Glutamate Based Prostate-Specific Membrane Antigen Ligands for Potential Use as Theranostics.

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Journal:  ACS Med Chem Lett       Date:  2018-10-24       Impact factor: 4.345

3.  Prostate-specific membrane antigen targeted protein contrast agents for molecular imaging of prostate cancer by MRI.

Authors:  Fan Pu; Mani Salarian; Shenghui Xue; Jingjuan Qiao; Jie Feng; Shanshan Tan; Anvi Patel; Xin Li; Kenza Mamouni; Khan Hekmatyar; Juan Zou; Daqing Wu; Jenny J Yang
Journal:  Nanoscale       Date:  2016-03-10       Impact factor: 7.790

4.  Design of composite inhibitors targeting glutamate carboxypeptidase II: the importance of effector functionalities.

Authors:  Zora Novakova; Jiri Cerny; Cindy J Choy; Jessie R Nedrow; Joeseph K Choi; Jacek Lubkowski; Clifford E Berkman; Cyril Barinka
Journal:  FEBS J       Date:  2015-11-05       Impact factor: 5.542

Review 5.  Enhanced semiempirical QM methods for biomolecular interactions.

Authors:  Nusret Duygu Yilmazer; Martin Korth
Journal:  Comput Struct Biotechnol J       Date:  2015-02-28       Impact factor: 7.271

6.  Interactions of Urea-Based Inhibitors with Prostate-Specific Membrane Antigen for Boron Neutron Capture Therapy.

Authors:  Qiaoyu Hu; Kevin Padron; Daiki Hara; Junwei Shi; Alan Pollack; Rajeev Prabhakar; Wensi Tao
Journal:  ACS Omega       Date:  2021-12-01
  6 in total

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