Literature DB >> 24730880

Role of functionality in two-component signal transduction: a stochastic study.

Alok Kumar Maity1, Arnab Bandyopadhyay2, Pinaki Chaudhury1, Suman K Banik2.   

Abstract

We present a stochastic formalism for signal transduction processes in a bacterial two-component system. Using elementary mass action kinetics, the proposed model takes care of signal transduction in terms of a phosphotransfer mechanism between the cognate partners of a two-component system, viz., the sensor kinase and the response regulator. Based on the difference in functionality of the sensor kinase, the noisy phosphotransfer mechanism has been studied for monofunctional and bifunctional two-component systems using the formalism of the linear noise approximation. Steady-state analysis of both models quantifies different physically realizable quantities, e.g., the variance, the Fano factor (variance/mean), and mutual information. The resultant data reveal that both systems reliably transfer information of extracellular environment under low external stimulus and in a high-kinase-and-phosphatase regime. We extend our analysis further by studying the role of the two-component system in downstream gene regulation.

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Year:  2014        PMID: 24730880     DOI: 10.1103/PhysRevE.89.032713

Source DB:  PubMed          Journal:  Phys Rev E Stat Nonlin Soft Matter Phys        ISSN: 1539-3755


  3 in total

1.  Transient absolute robustness in stochastic biochemical networks.

Authors:  German A Enciso
Journal:  J R Soc Interface       Date:  2016-08       Impact factor: 4.118

2.  Evidence of Robustness in a Two-Component System Using a Synthetic Circuit.

Authors:  Arkajyoti Dutta; Paulami Rudra; Suman Kumar Banik; Jayanta Mukhopadhyay
Journal:  J Bacteriol       Date:  2020-01-29       Impact factor: 3.490

3.  Uncertainty propagation for deterministic models of biochemical networks using moment equations and the extended Kalman filter.

Authors:  Tamara Kurdyaeva; Andreas Milias-Argeitis
Journal:  J R Soc Interface       Date:  2021-08-04       Impact factor: 4.293

  3 in total

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