Literature DB >> 24729465

G-quadruplex structures and their interaction diversity with ligands.

Sulin Zhang1, Yanling Wu, Wen Zhang.   

Abstract

G-Quadruplexes are distinct nucleic acid secondary structures that are formed from G-rich DNA and RNA sequences; they are built around successive G-tetrads of Hoogsteen hydrogen-bonded guanine bases. The existence of G-quadruplex structures has been confirmed in the human telomere and genome, and their biological functions have been demonstrated. Thus, the prospect of using G-quadruplex structures as a novel target for drug design is important. This review focuses on structural polymorphism of G-quadruplexes on the basis of the classification of the strand number of the G-quadruplex formed and its interaction diversity with small molecules (G4-ligands) that display high affinity and, more importantly, selectivity. Also, we outlook some future challenges for G-quadruplex structure and ligand studies. Such information, together with the biological functions of for G-quadruplex, will be of crucial importance for the research and development of drugs that target G-quadruplexes formed from particular genes and human telomeres.
© 2014 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

Entities:  

Keywords:  G-Quadruplexes; drug design; interaction diversity; ligand effects; polymorphism

Mesh:

Substances:

Year:  2014        PMID: 24729465     DOI: 10.1002/cmdc.201300566

Source DB:  PubMed          Journal:  ChemMedChem        ISSN: 1860-7179            Impact factor:   3.466


  39 in total

1.  Overlapping but distinct: a new model for G-quadruplex biochemical specificity.

Authors:  Martin Volek; Sofia Kolesnikova; Katerina Svehlova; Pavel Srb; Ráchel Sgallová; Tereza Streckerová; Juan A Redondo; Václav Veverka; Edward A Curtis
Journal:  Nucleic Acids Res       Date:  2021-02-26       Impact factor: 16.971

2.  Oligonucleotide-Lipid Conjugates Forming G-Quadruplex Structures Are Potent and Pangenotypic Hepatitis C Virus Entry Inhibitors In Vitro and Ex Vivo.

Authors:  George Koutsoudakis; Alexia Paris de León; Carolina Herrera; Marcus Dorner; Gemma Pérez-Vilaró; Sébastien Lyonnais; Santiago Grijalvo; Ramon Eritja; Andreas Meyerhans; Gilles Mirambeau; Juana Díez
Journal:  Antimicrob Agents Chemother       Date:  2017-04-24       Impact factor: 5.191

Review 3.  [Application of atomic force microscopy-based single molecule force spectroscopy in G-quadruplex studies].

Authors:  Wenjing Liu; Tong Sun; Ping Zhang; Lin Li; Junhong Lv; Bin Li
Journal:  Nan Fang Yi Ke Da Xue Xue Bao       Date:  2018-08-30

Review 4.  V(D)J recombination, somatic hypermutation and class switch recombination of immunoglobulins: mechanism and regulation.

Authors:  Xiying Chi; Yue Li; Xiaoyan Qiu
Journal:  Immunology       Date:  2020-02-27       Impact factor: 7.397

5.  Conformation-sensitive nucleoside analogues as topology-specific fluorescence turn-on probes for DNA and RNA G-quadruplexes.

Authors:  Arun A Tanpure; Seergazhi G Srivatsan
Journal:  Nucleic Acids Res       Date:  2015-07-21       Impact factor: 16.971

6.  Purine biosynthetic intermediate-containing ribose-phosphate polymers as evolutionary precursors to RNA.

Authors:  Harold S Bernhardt; Roger K Sandwick
Journal:  J Mol Evol       Date:  2014-09-02       Impact factor: 2.395

Review 7.  Modulation of DNA structure formation using small molecules.

Authors:  Imee M A Del Mundo; Karen M Vasquez; Guliang Wang
Journal:  Biochim Biophys Acta Mol Cell Res       Date:  2019-09-03       Impact factor: 4.739

8.  Conformations of Human Telomeric G-Quadruplex Studied Using a Nucleotide-Independent Nitroxide Label.

Authors:  Xiaojun Zhang; Cui-Xia Xu; Rosa Di Felice; Jiri Sponer; Barira Islam; Petr Stadlbauer; Yuan Ding; Lingling Mao; Zong-Wan Mao; Peter Z Qin
Journal:  Biochemistry       Date:  2015-12-31       Impact factor: 3.162

9.  POT1-TPP1 Binding and Unfolding of Telomere DNA Discriminates against Structural Polymorphism.

Authors:  Michael R Mullins; Malligarjunan Rajavel; Wilnelly Hernandez-Sanchez; Maria de la Fuente; Sherri M Biendarra; Michael E Harris; Derek J Taylor
Journal:  J Mol Biol       Date:  2016-05-10       Impact factor: 6.151

10.  Probing G-quadruplex topologies and recognition concurrently in real time and 3D using a dual-app nucleoside probe.

Authors:  Ashok Nuthanakanti; Ishtiyaq Ahmed; Saddam Y Khatik; Kayarat Saikrishnan; Seergazhi G Srivatsan
Journal:  Nucleic Acids Res       Date:  2019-07-09       Impact factor: 16.971

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