Literature DB >> 24729084

Analyzing 395,793 samples shows significant association between rs999737 polymorphism and breast cancer.

Haiying Dong1, Zhiying Gao, Chengchong Li, Junping Wang, Ming Jin, Hua Rong, Yingcai Niu, Jicheng Liu.   

Abstract

Large-scale genome-wide association studies (GWAS) have been conducted and reported the association between rs999737 polymorphism at 14q24.1 (RAD51L1) and breast cancer risk. Following studies investigated rs999737 polymorphism in European and Asian populations. However, some of these studies reported weak and no significant association. Here, we reevaluated this association using large-scale samples from previous 11 studies (n=395,793; 162,261 cases and 233,532 controls) from the PubMed database. We evaluated the genetic heterogeneity among the selected studies. The pooled odds ratio (OR) is calculated by the fixed effect model. All statistical tests for heterogeneity and meta-analysis were computed using R package. We did not identify significant heterogeneity among the included studies using the allele model (P=0.1314 and I (2)=33.4 %). We observed significant association between rs999737 and breast cancer using the allele model (P=2.47E - 35, OR=0.92, 95 % confidence interval (CI) 0.91-0.93). Our analysis further supports previous findings that the rs999737 polymorphism contributes to breast cancer susceptibility. We believe that our finding will be very useful for future genetic studies in breast cancer.

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Year:  2014        PMID: 24729084     DOI: 10.1007/s13277-014-1805-4

Source DB:  PubMed          Journal:  Tumour Biol        ISSN: 1010-4283


  14 in total

1.  Potential etiologic and functional implications of genome-wide association loci for human diseases and traits.

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Journal:  Proc Natl Acad Sci U S A       Date:  2009-05-27       Impact factor: 11.205

2.  Common alleles at 6q25.1 and 1p11.2 are associated with breast cancer risk for BRCA1 and BRCA2 mutation carriers.

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Journal:  Hum Mol Genet       Date:  2011-05-18       Impact factor: 6.150

3.  Common breast cancer susceptibility variants in LSP1 and RAD51L1 are associated with mammographic density measures that predict breast cancer risk.

Authors:  Celine M Vachon; Christopher G Scott; Peter A Fasching; Per Hall; Rulla M Tamimi; Jingmei Li; Jennifer Stone; Carmel Apicella; Fabrice Odefrey; Gretchen L Gierach; Sebastian M Jud; Katharina Heusinger; Matthias W Beckmann; Marina Pollan; Pablo Fernández-Navarro; Anna Gonzalez-Neira; Javier Benitez; Carla H van Gils; Mariëtte Lokate; N Charlotte Onland-Moret; Petra H M Peeters; Judith Brown; Jean Leyland; Jajini S Varghese; Douglas F Easton; Deborah J Thompson; Robert N Luben; Ruth M L Warren; Nicholas J Wareham; Ruth J F Loos; Kay-Tee Khaw; Giske Ursin; Eunjung Lee; Simon A Gayther; Susan J Ramus; Rosalind A Eeles; Martin O Leach; Gek Kwan-Lim; Fergus J Couch; Graham G Giles; Laura Baglietto; Kavitha Krishnan; Melissa C Southey; Loic Le Marchand; Laurence N Kolonel; Christy Woolcott; Gertraud Maskarinec; Christopher A Haiman; Kate Walker; Nichola Johnson; Valeria A McCormack; Margarethe Biong; Grethe I G Alnaes; Inger Torhild Gram; Vessela N Kristensen; Anne-Lise Børresen-Dale; Sara Lindström; Susan E Hankinson; David J Hunter; Irene L Andrulis; Julia A Knight; Norman F Boyd; Jonine D Figuero; Jolanta Lissowska; Ewa Wesolowska; Beata Peplonska; Agnieszka Bukowska; Edyta Reszka; JianJun Liu; Louise Eriksson; Kamila Czene; Tina Audley; Anna H Wu; V Shane Pankratz; John L Hopper; Isabel dos-Santos-Silva
Journal:  Cancer Epidemiol Biomarkers Prev       Date:  2012-03-27       Impact factor: 4.254

4.  Interactions between genetic variants and breast cancer risk factors in the breast and prostate cancer cohort consortium.

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Journal:  J Natl Cancer Inst       Date:  2011-07-26       Impact factor: 13.506

5.  Mutation analysis of RAD51L1 (RAD51B/REC2) in multiple-case, non-BRCA1/2 breast cancer families.

Authors:  Julie Johnson; Sue Healey; Kum Kum Khanna; Georgia Chenevix-Trench
Journal:  Breast Cancer Res Treat       Date:  2011-04-28       Impact factor: 4.872

Review 6.  A systematic review of the quality of genetic association studies in human sepsis.

Authors:  Martin Fraser Clark; Simon Victor Baudouin
Journal:  Intensive Care Med       Date:  2006-09-07       Impact factor: 17.440

7.  A multistage genome-wide association study in breast cancer identifies two new risk alleles at 1p11.2 and 14q24.1 (RAD51L1).

Authors:  Gilles Thomas; Kevin B Jacobs; Peter Kraft; Meredith Yeager; Sholom Wacholder; David G Cox; Susan E Hankinson; Amy Hutchinson; Zhaoming Wang; Kai Yu; Nilanjan Chatterjee; Montserrat Garcia-Closas; Jesus Gonzalez-Bosquet; Ludmila Prokunina-Olsson; Nick Orr; Walter C Willett; Graham A Colditz; Regina G Ziegler; Christine D Berg; Saundra S Buys; Catherine A McCarty; Heather Spencer Feigelson; Eugenia E Calle; Michael J Thun; Ryan Diver; Ross Prentice; Rebecca Jackson; Charles Kooperberg; Rowan Chlebowski; Jolanta Lissowska; Beata Peplonska; Louise A Brinton; Alice Sigurdson; Michele Doody; Parveen Bhatti; Bruce H Alexander; Julie Buring; I-Min Lee; Lars J Vatten; Kristian Hveem; Merethe Kumle; Richard B Hayes; Margaret Tucker; Daniela S Gerhard; Joseph F Fraumeni; Robert N Hoover; Stephen J Chanock; David J Hunter
Journal:  Nat Genet       Date:  2009-03-29       Impact factor: 38.330

8.  PICALM gene rs3851179 polymorphism contributes to Alzheimer's disease in an Asian population.

Authors:  Guiyou Liu; Shuyan Zhang; Zhiyou Cai; Guoda Ma; Liangcai Zhang; Yongshuai Jiang; Rennan Feng; Mingzhi Liao; Zugen Chen; Bin Zhao; Keshen Li
Journal:  Neuromolecular Med       Date:  2013-04-10       Impact factor: 3.843

9.  Genome-wide association studies identify four ER negative-specific breast cancer risk loci.

Authors:  Montserrat Garcia-Closas; Fergus J Couch; Sara Lindstrom; Kyriaki Michailidou; Marjanka K Schmidt; Mark N Brook; Nick Orr; Suhn Kyong Rhie; Elio Riboli; Heather S Feigelson; Loic Le Marchand; Julie E Buring; Diana Eccles; Penelope Miron; Peter A Fasching; Hiltrud Brauch; Jenny Chang-Claude; Jane Carpenter; Andrew K Godwin; Heli Nevanlinna; Graham G Giles; Angela Cox; John L Hopper; Manjeet K Bolla; Qin Wang; Joe Dennis; Ed Dicks; Will J Howat; Nils Schoof; Stig E Bojesen; Diether Lambrechts; Annegien Broeks; Irene L Andrulis; Pascal Guénel; Barbara Burwinkel; Elinor J Sawyer; Antoinette Hollestelle; Olivia Fletcher; Robert Winqvist; Hermann Brenner; Arto Mannermaa; Ute Hamann; Alfons Meindl; Annika Lindblom; Wei Zheng; Peter Devillee; Mark S Goldberg; Jan Lubinski; Vessela Kristensen; Anthony Swerdlow; Hoda Anton-Culver; Thilo Dörk; Kenneth Muir; Keitaro Matsuo; Anna H Wu; Paolo Radice; Soo Hwang Teo; Xiao-Ou Shu; William Blot; Daehee Kang; Mikael Hartman; Suleeporn Sangrajrang; Chen-Yang Shen; Melissa C Southey; Daniel J Park; Fleur Hammet; Jennifer Stone; Laura J Van't Veer; Emiel J Rutgers; Artitaya Lophatananon; Sarah Stewart-Brown; Pornthep Siriwanarangsan; Julian Peto; Michael G Schrauder; Arif B Ekici; Matthias W Beckmann; Isabel Dos Santos Silva; Nichola Johnson; Helen Warren; Ian Tomlinson; Michael J Kerin; Nicola Miller; Federick Marme; Andreas Schneeweiss; Christof Sohn; Therese Truong; Pierre Laurent-Puig; Pierre Kerbrat; Børge G Nordestgaard; Sune F Nielsen; Henrik Flyger; Roger L Milne; Jose Ignacio Arias Perez; Primitiva Menéndez; Heiko Müller; Volker Arndt; Christa Stegmaier; Peter Lichtner; Magdalena Lochmann; Christina Justenhoven; Yon-Dschun Ko; Taru A Muranen; Kristiina Aittomäki; Carl Blomqvist; Dario Greco; Tuomas Heikkinen; Hidemi Ito; Hiroji Iwata; Yasushi Yatabe; Natalia N Antonenkova; Sara Margolin; Vesa Kataja; Veli-Matti Kosma; Jaana M Hartikainen; Rosemary Balleine; Chiu-Chen Tseng; David Van Den Berg; Daniel O Stram; Patrick Neven; Anne-Sophie Dieudonné; Karin Leunen; Anja Rudolph; Stefan Nickels; Dieter Flesch-Janys; Paolo Peterlongo; Bernard Peissel; Loris Bernard; Janet E Olson; Xianshu Wang; Kristen Stevens; Gianluca Severi; Laura Baglietto; Catriona McLean; Gerhard A Coetzee; Ye Feng; Brian E Henderson; Fredrick Schumacher; Natalia V Bogdanova; France Labrèche; Martine Dumont; Cheng Har Yip; Nur Aishah Mohd Taib; Ching-Yu Cheng; Martha Shrubsole; Jirong Long; Katri Pylkäs; Arja Jukkola-Vuorinen; Saila Kauppila; Julia A Knight; Gord Glendon; Anna Marie Mulligan; Robertus A E M Tollenaar; Caroline M Seynaeve; Mieke Kriege; Maartje J Hooning; Ans M W van den Ouweland; Carolien H M van Deurzen; Wei Lu; Yu-Tang Gao; Hui Cai; Sabapathy P Balasubramanian; Simon S Cross; Malcolm W R Reed; Lisa Signorello; Qiuyin Cai; Mitul Shah; Hui Miao; Ching Wan Chan; Kee Seng Chia; Anna Jakubowska; Katarzyna Jaworska; Katarzyna Durda; Chia-Ni Hsiung; Pei-Ei Wu; Jyh-Cherng Yu; Alan Ashworth; Michael Jones; Daniel C Tessier; Anna González-Neira; Guillermo Pita; M Rosario Alonso; Daniel Vincent; Francois Bacot; Christine B Ambrosone; Elisa V Bandera; Esther M John; Gary K Chen; Jennifer J Hu; Jorge L Rodriguez-Gil; Leslie Bernstein; Michael F Press; Regina G Ziegler; Robert M Millikan; Sandra L Deming-Halverson; Sarah Nyante; Sue A Ingles; Quinten Waisfisz; Helen Tsimiklis; Enes Makalic; Daniel Schmidt; Minh Bui; Lorna Gibson; Bertram Müller-Myhsok; Rita K Schmutzler; Rebecca Hein; Norbert Dahmen; Lars Beckmann; Kirsimari Aaltonen; Kamila Czene; Astrid Irwanto; Jianjun Liu; Clare Turnbull; Nazneen Rahman; Hanne Meijers-Heijboer; Andre G Uitterlinden; Fernando Rivadeneira; Curtis Olswold; Susan Slager; Robert Pilarski; Foluso Ademuyiwa; Irene Konstantopoulou; Nicholas G Martin; Grant W Montgomery; Dennis J Slamon; Claudia Rauh; Michael P Lux; Sebastian M Jud; Thomas Bruning; Joellen Weaver; Priyanka Sharma; Harsh Pathak; Will Tapper; Sue Gerty; Lorraine Durcan; Dimitrios Trichopoulos; Rosario Tumino; Petra H Peeters; Rudolf Kaaks; Daniele Campa; Federico Canzian; Elisabete Weiderpass; Mattias Johansson; Kay-Tee Khaw; Ruth Travis; Françoise Clavel-Chapelon; Laurence N Kolonel; Constance Chen; Andy Beck; Susan E Hankinson; Christine D Berg; Robert N Hoover; Jolanta Lissowska; Jonine D Figueroa; Daniel I Chasman; Mia M Gaudet; W Ryan Diver; Walter C Willett; David J Hunter; Jacques Simard; Javier Benitez; Alison M Dunning; Mark E Sherman; Georgia Chenevix-Trench; Stephen J Chanock; Per Hall; Paul D P Pharoah; Celine Vachon; Douglas F Easton; Christopher A Haiman; Peter Kraft
Journal:  Nat Genet       Date:  2013-04       Impact factor: 38.330

10.  Quantitative assessment of 2q35-rs13387042 polymorphism and hormone receptor status with breast cancer risk.

Authors:  Chao Gu; Liang Zhou; Jianping Yu
Journal:  PLoS One       Date:  2013-07-22       Impact factor: 3.240

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Authors:  Min Shi; Katie M O'Brien; Dale P Sandler; Jack A Taylor; Dmitri V Zaykin; Clarice R Weinberg
Journal:  Breast Cancer Res Treat       Date:  2016-11-15       Impact factor: 4.872

2.  DOT: Gene-set analysis by combining decorrelated association statistics.

Authors:  Olga A Vsevolozhskaya; Min Shi; Fengjiao Hu; Dmitri V Zaykin
Journal:  PLoS Comput Biol       Date:  2020-04-14       Impact factor: 4.475

  2 in total

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