Literature DB >> 24725212

Hydration behavior at the ice-binding surface of the Tenebrio molitor antifreeze protein.

Uday Sankar Midya1, Sanjoy Bandyopadhyay.   

Abstract

Molecular dynamics (MD) simulations have been carried out at two different temperatures (300 and 220 K) to study the conformational rigidity of the hyperactive Tenebrio molitor antifreeze protein (TmAFP) in aqueous medium and the structural arrangements of water molecules hydrating its surface. It is found that irrespective of the temperature the ice-binding surface (IBS) of the protein is relatively more rigid than its nonice-binding surface (NIBS). The presence of a set of regularly arranged internally bound water molecules is found to play an important role in maintaining the flat rigid nature of the IBS. Importantly, the calculations reveal that the strategically located hydroxyl oxygens of the threonine (Thr) residues in the IBS influence the arrangements of five sets of ordered waters around it on two parallel planes that closely resemble the basal plane of ice. As a result, these waters can register well with the ice basal plane, thereby allowing the IBS to preferentially bind at the ice interface and inhibit its growth. This provides a possible molecular reason behind the ice-binding activity of TmAFP at the basal plane of ice.

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Year:  2014        PMID: 24725212     DOI: 10.1021/jp412528b

Source DB:  PubMed          Journal:  J Phys Chem B        ISSN: 1520-5207            Impact factor:   2.991


  7 in total

1.  Observation of ice-like water layers at an aqueous protein surface.

Authors:  Konrad Meister; Simona Strazdaite; Arthur L DeVries; Stephan Lotze; Luuk L C Olijve; Ilja K Voets; Huib J Bakker
Journal:  Proc Natl Acad Sci U S A       Date:  2014-12-02       Impact factor: 11.205

2.  Preordering of water is not needed for ice recognition by hyperactive antifreeze proteins.

Authors:  Arpa Hudait; Daniel R Moberg; Yuqing Qiu; Nathan Odendahl; Francesco Paesani; Valeria Molinero
Journal:  Proc Natl Acad Sci U S A       Date:  2018-07-09       Impact factor: 11.205

3.  The biological function of an insect antifreeze protein simulated by molecular dynamics.

Authors:  Michael J Kuiper; Craig J Morton; Sneha E Abraham; Angus Gray-Weale
Journal:  Elife       Date:  2015-05-07       Impact factor: 8.140

4.  Characterization of the Local Structure in Liquid Water by Various Order Parameters.

Authors:  Elise Duboué-Dijon; Damien Laage
Journal:  J Phys Chem B       Date:  2015-06-19       Impact factor: 2.991

5.  Investigation of changes in structure and thermodynamic of spruce budworm antifreeze protein under subfreezing temperature.

Authors:  Hung Nguyen; Ly Le
Journal:  Sci Rep       Date:  2017-01-20       Impact factor: 4.379

6.  Balance between hydration enthalpy and entropy is important for ice binding surfaces in Antifreeze Proteins.

Authors:  Michael Schauperl; Maren Podewitz; Teresa S Ortner; Franz Waibl; Alexander Thoeny; Thomas Loerting; Klaus R Liedl
Journal:  Sci Rep       Date:  2017-09-19       Impact factor: 4.379

7.  Calcium-Binding Generates the Semi-Clathrate Waters on a Type II Antifreeze Protein to Adsorb onto an Ice Crystal Surface.

Authors:  Tatsuya Arai; Yoshiyuki Nishimiya; Yasushi Ohyama; Hidemasa Kondo; Sakae Tsuda
Journal:  Biomolecules       Date:  2019-04-27
  7 in total

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