Literature DB >> 24725010

Ultrafast microfluidic mixer for tracking the early folding kinetics of human telomere G-quadruplex.

Ying Li1, Chao Liu, Xiaojun Feng, Youzhi Xu, Bi-Feng Liu.   

Abstract

The folding of G-quadruplex is hypothesized to undergo a complex process, from the formation of a hairpin structure to a triplex intermediate and to the final G-quadruplex. Currently, no experimental evidence has been found for the hairpin formation, because it folds in the time regime of 10-100 μs, entailing the development of microfluidic mixers with a mixing time of less than 10 μs. In this paper, we reported an ultrarapid micromixer with a mixing time of 5.5 μs, which represents the fastest turbulent micromixer to our best knowledge. Evaluations of the micromixer were conducted to confirm its mixing efficiency for small molecules and macromolecules. This new micromixer enabled us to interrogate the hairpin formation in the early folding process of human telomere G-quadruplex. The experimental kinetic evidence for the formation of hairpin was obtained for the first time.

Entities:  

Mesh:

Year:  2014        PMID: 24725010     DOI: 10.1021/ac500112d

Source DB:  PubMed          Journal:  Anal Chem        ISSN: 0003-2700            Impact factor:   6.986


  14 in total

1.  Sandwich-format 3D printed microfluidic mixers: a flexible platform for multi-probe analysis.

Authors:  Drew P Kise; Michael J Reddish; R Brian Dyer
Journal:  J Micromech Microeng       Date:  2015-10-27       Impact factor: 1.881

2.  Millisecond Time-Resolved Solid-State NMR Initiated by Rapid Inverse Temperature Jumps.

Authors:  C Blake Wilson; Robert Tycko
Journal:  J Am Chem Soc       Date:  2022-05-26       Impact factor: 16.383

3.  Folding dynamics and conformational heterogeneity of human telomeric G-quadruplex structures in Na+ solutions by single molecule FRET microscopy.

Authors:  Sofie L Noer; Søren Preus; Daniel Gudnason; Mikayel Aznauryan; Jean-Louis Mergny; Victoria Birkedal
Journal:  Nucleic Acids Res       Date:  2015-11-28       Impact factor: 16.971

4.  Droplet-based microfluidic platform for measurement of rapid erythrocyte water transport.

Authors:  Byung-Ju Jin; Cristina Esteva-Font; A S Verkman
Journal:  Lab Chip       Date:  2015-08-21       Impact factor: 6.799

5.  Mixing in microfluidic devices and enhancement methods.

Authors:  Kevin Ward; Z Hugh Fan
Journal:  J Micromech Microeng       Date:  2015-08-21       Impact factor: 1.881

6.  Towards Microfluidic-Based Exosome Isolation and Detection for Tumor Therapy.

Authors:  Jie Wang; Peng Ma; Daniel H Kim; Bi-Feng Liu; Utkan Demirci
Journal:  Nano Today       Date:  2021-01-13       Impact factor: 20.722

7.  Hairpins participating in folding of human telomeric sequence quadruplexes studied by standard and T-REMD simulations.

Authors:  Petr Stadlbauer; Petra Kührová; Pavel Banáš; Jaroslav Koča; Giovanni Bussi; Lukáš Trantírek; Michal Otyepka; Jiří Šponer
Journal:  Nucleic Acids Res       Date:  2015-10-03       Impact factor: 16.971

8.  Serial DNA relay in DNA logic gates by electrical fusion and mechanical splitting of droplets.

Authors:  Hiroki Yasuga; Kosuke Inoue; Ryuji Kawano; Masahiro Takinoue; Toshihisa Osaki; Koki Kamiya; Norihisa Miki; Shoji Takeuchi
Journal:  PLoS One       Date:  2017-07-10       Impact factor: 3.240

9.  Effects of monovalent cations on folding kinetics of G-quadruplexes.

Authors:  Jing You; Hui Li; Xi-Ming Lu; Wei Li; Peng-Ye Wang; Shuo-Xing Dou; Xu-Guang Xi
Journal:  Biosci Rep       Date:  2017-07-12       Impact factor: 3.840

10.  Involvement of G-triplex and G-hairpin in the multi-pathway folding of human telomeric G-quadruplex.

Authors:  Xi-Miao Hou; Yi-Ben Fu; Wen-Qiang Wu; Lei Wang; Fang-Yuan Teng; Ping Xie; Peng-Ye Wang; Xu-Guang Xi
Journal:  Nucleic Acids Res       Date:  2017-11-02       Impact factor: 16.971

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