Literature DB >> 24723915

Structure and evolution of the magnetochrome domains: no longer alone.

Pascal Arnoux1, Marina I Siponen1, Christopher T Lefèvre1, Nicolas Ginet1, David Pignol1.   

Abstract

Magnetotactic bacteria (MTB) can swim along Earth's magnetic field lines, thanks to the alignment of dedicated cytoplasmic organelles. These organelles, termed magnetosomes, are proteolipidic vesicles filled by a 35-120 nm crystal of either magnetite or greigite. The formation and alignment of magnetosomes are mediated by a group of specific genes, the mam genes, encoding the magnetosome-associated proteins. The whole process of magnetosome biogenesis can be divided into four sequential steps; (i) cytoplasmic membrane invagination, (ii) magnetosomes alignment, (iii) iron crystal nucleation and (iv) species-dependent mineral size and shape control. Since both magnetite and greigite are a mix of iron (III) and iron (II), iron redox state management within the magnetosome vesicle is a key issue. Recently, studies have started pointing out the importance of a MTB-specific c-type cytochrome domain found in several magnetosome-associated proteins (MamE, P, T, and X). This magnetochrome (MCR) domain is almost always found in tandem, and this tandem is either found alone (MamT), in combination with a PDZ domain (MamP), a domain of unknown function (MamX) or with a trypsin combined to one or two PDZ domains (MamE). By taking advantage of new genomic data available on MTB and a recent structural study of MamP, which helped define the MCR domain boundaries, we attempt to retrace the evolutionary history within and between the different MCR-containing proteins. We propose that the observed tandem repeat of MCR is the result of a convergent evolution and attempt to explain why this domain is rarely found alone.

Entities:  

Keywords:  cytochrome; evolution; iron; magnetochrome; magnetosome; magnetotactic bacteria

Year:  2014        PMID: 24723915      PMCID: PMC3971196          DOI: 10.3389/fmicb.2014.00117

Source DB:  PubMed          Journal:  Front Microbiol        ISSN: 1664-302X            Impact factor:   5.640


  39 in total

1.  An acidic protein aligns magnetosomes along a filamentous structure in magnetotactic bacteria.

Authors:  André Scheffel; Manuela Gruska; Damien Faivre; Alexandros Linaroudis; Jürgen M Plitzko; Dirk Schüler
Journal:  Nature       Date:  2005-11-20       Impact factor: 49.962

2.  The magnetosome proteins MamX, MamZ and MamH are involved in redox control of magnetite biomineralization in Magnetospirillum gryphiswaldense.

Authors:  Oliver Raschdorf; Frank D Müller; Mihály Pósfai; Jürgen M Plitzko; Dirk Schüler
Journal:  Mol Microbiol       Date:  2013-07-25       Impact factor: 3.501

3.  MamK, a bacterial actin, forms dynamic filaments in vivo that are regulated by the acidic proteins MamJ and LimJ.

Authors:  Olga Draper; Meghan E Byrne; Zhuo Li; Sepehr Keyhani; Joyce Cueto Barrozo; Grant Jensen; Arash Komeili
Journal:  Mol Microbiol       Date:  2011-09-14       Impact factor: 3.501

4.  Complete genome sequence of the facultative anaerobic magnetotactic bacterium Magnetospirillum sp. strain AMB-1.

Authors:  Tadashi Matsunaga; Yoshiko Okamura; Yorikane Fukuda; Aris Tri Wahyudi; Yaeko Murase; Haruko Takeyama
Journal:  DNA Res       Date:  2005       Impact factor: 4.458

5.  Cre-lox-based method for generation of large deletions within the genomic magnetosome island of Magnetospirillum gryphiswaldense.

Authors:  Susanne Ullrich; Dirk Schüler
Journal:  Appl Environ Microbiol       Date:  2010-02-19       Impact factor: 4.792

6.  Conservation of proteobacterial magnetosome genes and structures in an uncultivated member of the deep-branching Nitrospira phylum.

Authors:  Christian Jogler; Gerhard Wanner; Sebastian Kolinko; Martina Niebler; Rudolf Amann; Nikolai Petersen; Michael Kube; Richard Reinhardt; Dirk Schüler
Journal:  Proc Natl Acad Sci U S A       Date:  2010-12-29       Impact factor: 11.205

7.  A cultured greigite-producing magnetotactic bacterium in a novel group of sulfate-reducing bacteria.

Authors:  Christopher T Lefèvre; Nicolas Menguy; Fernanda Abreu; Ulysses Lins; Mihály Pósfai; Tanya Prozorov; David Pignol; Richard B Frankel; Dennis A Bazylinski
Journal:  Science       Date:  2011-12-23       Impact factor: 47.728

8.  Two bifunctional enzymes with ferric reduction ability play complementary roles during magnetosome synthesis in Magnetospirillum gryphiswaldense MSR-1.

Authors:  Chan Zhang; Xia Meng; Ningxiao Li; Wei Wang; Yuan Sun; Wei Jiang; Guohua Guan; Ying Li
Journal:  J Bacteriol       Date:  2012-12-14       Impact factor: 3.490

9.  Jalview Version 2--a multiple sequence alignment editor and analysis workbench.

Authors:  Andrew M Waterhouse; James B Procter; David M A Martin; Michèle Clamp; Geoffrey J Barton
Journal:  Bioinformatics       Date:  2009-01-16       Impact factor: 6.937

10.  A second actin-like MamK protein in Magnetospirillum magneticum AMB-1 encoded outside the genomic magnetosome island.

Authors:  Jean-Baptiste Rioux; Nadège Philippe; Sandrine Pereira; David Pignol; Long-Fei Wu; Nicolas Ginet
Journal:  PLoS One       Date:  2010-02-10       Impact factor: 3.240

View more
  4 in total

Review 1.  From invagination to navigation: The story of magnetosome-associated proteins in magnetotactic bacteria.

Authors:  Shiran Barber-Zucker; Noa Keren-Khadmy; Raz Zarivach
Journal:  Protein Sci       Date:  2015-11-03       Impact factor: 6.725

2.  Intracellular biomineralization in bacteria.

Authors:  Wei Lin; Karim Benzerara; Damien Faivre; Yongxin Pan
Journal:  Front Microbiol       Date:  2014-06-12       Impact factor: 5.640

3.  The transcriptomic landscape of Magnetospirillum gryphiswaldense during magnetosome biomineralization.

Authors:  Cornelius N Riese; Manuel Wittchen; Valérie Jérôme; Ruth Freitag; Tobias Busche; Jörn Kalinowski; Dirk Schüler
Journal:  BMC Genomics       Date:  2022-10-10       Impact factor: 4.547

4.  Genome-Wide Identification of Essential and Auxiliary Gene Sets for Magnetosome Biosynthesis in Magnetospirillum gryphiswaldense.

Authors:  Karen T Silva; Margarete Schüler; Frank Mickoleit; Theresa Zwiener; Frank D Müller; Ram Prasad Awal; Alfons Weig; Andreas Brachmann; René Uebe; Dirk Schüler
Journal:  mSystems       Date:  2020-11-17       Impact factor: 6.496

  4 in total

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