| Literature DB >> 24723761 |
Kleoniki Keklikoglou1, Sarah Faulwetter2, Giorgos Chatzigeorgiou1, Fabio Badalamenti3, Militiadis Spyridon Kitsos4, Christos Arvanitidis5.
Abstract
This paper describes a dataset of polychaetes (Annelida) from 14 midlittoral rocky shore sampling sites in Greece and Italy (Mediterranean Sea). The dataset combines the outcome of four different projects studying the hard substrate midlittoral zone in the Mediterranean between 1984 and 2009. Samples were collected by scraping and collecting the organisms from a framed area. The maximal sampling depth was 1.5 m. In total, 123 polychaete species were recorded, five of which are new records for the respective biogeographic sectors of the Mediterranean. The dataset contains 788 occurrence records, fully annotated with all required metadata. These data contribute to the knowledge of a previously very understudied regional habitat, since at present, comprehensive lists of the midlittoral communities in the Mediterranean are provided through only a few, paper-based, studies. This dataset is one of the first electronic data compilations of the Mediterranean midlittoral zone communities and certainly the most comprehensive of its kind, contributing to the ongoing efforts of the Ocean Biogeographic Information System (OBIS) which aims at filling the gaps in our current knowledge of the world's oceans. It is accessible at http://ipt.vliz.be/resource.do?r=mediterraneanpolychaetaintertidal.Entities:
Keywords: 1984–2009; Greece; Italy; Mediterranean Sea; Midlittoral zone; Polychaeta; biodiversity; intertidal; rocky shores
Year: 2013 PMID: 24723761 PMCID: PMC3964708 DOI: 10.3897/BDJ.1.e961
Source DB: PubMed Journal: Biodivers Data J ISSN: 1314-2828
Coordinates, depth and sampling dates of the sampling localities
| Country | Sampling Site | Latitude | Longitude | Minimum depth (in meters) | Maximum depth (in meters) | Sampling period |
|---|---|---|---|---|---|---|
| Greece | Alykes | 0 | 0.5 | 09/2007 and 06/2008 | ||
| Greece | Elounda | 0 | 0.5 | 09/2007 and 05/2009 | ||
| Greece | Evripos channel (St. 1a) | 0 | 0.2 | 09/1997-10/1997 | ||
| Greece | Evripos channel (St. 1b) | 0 | 0.2 | 09/1997-10/1997 | ||
| Greece | Evripos channel (St. 1c) | 0 | 0.2 | 09/1997-10/1997 | ||
| Greece | Thermaikos Gulf (St.2a) | 0 | 0.2 | 09/1997-10/1997 | ||
| Greece | Thermaikos Gulf (St.2b) | 0 | 0.2 | 09/1997-10/1997 | ||
| Greece | Thermaikos Gulf (St.2c) | 0 | 0.2 | 09/1997-10/1997 | ||
| Greece | Nea Roda | 0 | 1.5 | 09/1997-10/1997 | ||
| Greece | Porto Karas | 0 | 0.3 | 09/1997-10/1997 | ||
| Greece | Porto Lagos | 0 | 0.2 | 09/1997-10/1997 | ||
| Italy | Balestrate | 0 | 0.3 | 1989 (spring, summer, autumn, winter) | ||
| Italy | Zingaro | 0 | 0.3 | 1984 (spring) | ||
| Italy | Capo Gallo | 0 | 0.3 | 1986 (spring, autumn, winter) |
Figure 1.Map of the sampling locations
Figure 2.Temporal distribution of the number of polychaete records in the Mediterranean Sea present in the Ocean Biogeographic Information System (OBIS) and new contributions by the MidMedPol dataset. Only records from OBIS that contain information about the collection year were included, and data from before 1960 were omitted for reasons of clarity. a number of records for all depths, b number of records in the depth range of 0–5m. Diagrams based on the data from Suppl. material 1.
Figure 3.Overview of all steps leading to the final release of the dataset: 1 sampling, independently performed at the three different institutions (AUTH = Aristotle University of Thessaloniki, UNIPA = University of Palermo, HCMR = Hellenic Centre for Marine Research) 2 identification of polychaete specimens in the laboratory 3 data in paper-based format 4 digitisation 5 data in electronic format (spreadsheets) 6 integration of the three independent datasets into a standardised format, exclusion of records not identified to species level, retrieval of missing information, georeferencing of coordinates through Google Maps, standardisation of taxonomy against the World Register of Marine Species and recent literature, general quality control 7 export of data as a DarwinCore Archive 8 generation of dataset-level metadata 9 publication of the data as a data paper and through an IPT server 10 in the future, further dissemination of data by integration into other databases, personal downloads, archiving, etc.
Taxa identified to species-level are included in the dataset and new records for the geographic areas.
| Family | Species | New record for area | References used for identification |
|---|---|---|---|
| Aegean Sea, Greece | |||
| Eastern Mediterranean | |||
| Aegean Sea, Greece | |||
| Aegean Sea, Greece | |||
| Italy | |||
Figure 4.Distribution of species per family (abundance and percentage) for the most species-rich families in the MidMedPol dataset. Families with less than four species were combined in the category "Others". These are: , (3 species each), (2 species), , , , , , , , , and (1 species each). Diagram based on the data from Suppl. material 2.
Figure 5.Number of species, genera and families per sampling location. Diagram based on the data from Suppl. material 3
| Column label | Column description |
|---|---|
| recordNumber | A unique identifier for the record within the data set or collection. |
| scientificName | The scientific name of the taxon, including authorship. |
| scientificNameAuthorship | The authorship information for the scientificName formatted according to the conventions of the applicable nomenclaturalCode. |
| acceptedNameUsage | The full name, with authorship and date information if known, of the currently valid (zoological) taxon. |
| taxonRemarks | Comments or notes about the taxon or name. |
| specificEpithet | The species epithet of the scientificName. |
| identificationQualifier | A brief phrase or a standard term ("cf.", "aff.") to express the determiner's doubts about the Identification. |
| genus | The full scientific name of the genus in which the taxon is classified. |
| family | The full scientific name of the family in which the taxon is classified. |
| order | The full scientific name of the orde in which the taxon is classified. |
| class | The full scientific name of the class in which the taxon is classified. |
| phylum | The full scientific name of the phylum in which the taxon is classified. |
| kingdom | The full scientific name of the kingdom in which the taxon is classified. |
| fieldNumber | Denotes the code of each replicate unit. |
| fieldNotes | Notes about this occurrence record. |
| EventDate | The sampling date. |
| verbatimEventDate | The verbatim expression of the sampling date. |
| year | The sampling year. |
| month | The sampling month. |
| day | The sampling day. |
| locality | The specific location where the sample was taken. |
| municipality | The full, unabbreviated name of the next smaller administrative region than county (city, municipality, etc.) in which the sampling location occurs. |
| island | The name of the island on or near which the sampling location occurs. |
| country | The name of the country in which the sampling location occurs. |
| countryCode | The standard code of the country in which the sampling location occurs. |
| continent | The name of the continent in which the sampling location occurs. |
| waterBody | The name of the water body in which the sampling location occurs. |
| decimalLatitude | The geographic latitude (in decimal degrees, using the spatial reference system given in geodeticDatum) of the geographic center of a Location. Positive values are north of the Equator, negative values are south of it. Legal values lie between -90 and 90, inclusive. |
| decimalLongitude | The geographic longitude (in decimal degrees, using the spatial reference system given in geodeticDatum) of the geographic center of a Location. Positive values are east of the Greenwich Meridian, negative values are west of it. Legal values lie between -180 and 180, inclusive. |
| GeoreferenceSources | A list (concatenated and separated) of maps, gazetteers, or other resources used to georeference the Location, described specifically enough to allow anyone in the future to use the same resources. |
| coordinateUncertaintyInMeters | The horizontal distance (in meters) from the given decimalLatitude and decimalLongitude describing the smallest circle containing the whole of the sampling location. |
| habitat | A category or description of the habitat from which the samples were collected. |
| minimumDepthInMeters | The lesser depth of a range of depth below the local surface, in meters. |
| maximumDepthInMeters | The greater depth of a range of depth below the local surface, in meters. |
| samplingProtocol | The description of the method or protocol used for sample collection. |
| basisOfRecord | The specific nature of the data record, as described in |
| preparations | Preparations and preservation methods for a specimen. |
| individualCount | The number of individuals in a replicate sample unit. In cases where replicates had been pooled, the average abundances are not included under "individualCount" but under "dynamicProperties" |
| dynamicProperties | Includes here as the only attribute "meanAbundance". These are the average abundances of those samples where the replicates had been pooled. |
| recordedBy | A list (concatenated and separated) of names of people responsible for recording the original Occurrence. |
| identifiedBy | A list (concatenated and separated) of names of people, groups, or organizations who identified the specimen. |
| dateIdentified | The date on which the specimen was identified. |
| identificationReferences | A list (concatenated and separated) of references (publication, global unique identifier, URI) used for identifying the specimen. |
| institutionCode | The name (or acronym) in use by the institution having custody of the object(s) or information referred to in the record. |
| institutionID | An identifier for the institution having custody of the object(s) or information referred to in the record. |
| datasetID | An identifier for the set of data. |
| datasetName | The name identifying the data set from which the record was derived. |
| rights | Information about rights held in and over the resource (copyright, intellectual property, etc.). |
| rightsHolder | A person or organization owning or managing rights over the resource. |
| id | A unique identifier for the record within the data set or collection, auto-incrementing number automatically added by the system. |
| taxonID | Aphia ID (Unique Identifier for the taxon within the World Register of Marine Species - |