Literature DB >> 24723149

A novel cluster of mariner-like elements belonging to mellifera subfamily from spiders and insects: implications of recent horizontal transfer on the South-West Islands of Japan.

Kaori Yamada1, Yuichi Kawanishi, Akinori Yamada, Gaku Tokuda, Raj Deep Gurung, Takeshi Sasaki, Yumiko Nakajima, Hideaki Maekawa.   

Abstract

Mariner-like elements (MLEs) have been isolated from various eukaryotic genomes and they are divided into 15 subfamilies, including main five subfamilies: mauritiana, cecropia, mellifera/capitata, irritans, and elegans/briggsae. In the present study, MLEs belonging to mellifera subfamily were isolated from various spiders and insects (Hymenoptera and Lepidoptera) inhabiting the South-West Islands of Japan and neighboring regions. MLEs isolated from 15 different species formed a distinct novel cluster in mellifera subfamily. MLEs obtained from three different species [i.e., the bee Amegilla senahai subflavescens (Amsmar1), the wasp Campsomeris sp. (Casmar1), and the swallowtail butterfly Pachliopta aristolochiae (Paamar1)] contained an intact open reading frame that encoded a putative transposase. These transposases exhibited high similarity of 97.9% among themselves. In case of Casmar1, the presence of an intact ORF was found in high frequencies (i.e., 11 out of 12 clones). In addition, these transposases also showed the presence of a terminal inverted repeat-binding motif, DD(34)D and two highly conserved amino acid motifs, (W/L)(I/L)PHQL and YSP(D/N)L(A/S)P. These two motifs differed from previously known motifs, WVPHEL and YSPDLAP. MLEs isolated from these three different species may have been inserted into their genomes by horizontal transfer. Furthermore, the presence of an intact ORF suggests that they are still active in habitats along these isolated islands.

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Year:  2014        PMID: 24723149     DOI: 10.1007/s10709-014-9762-9

Source DB:  PubMed          Journal:  Genetica        ISSN: 0016-6707            Impact factor:   1.082


  51 in total

1.  The GC-rich transposon Bytmar1 from the deep-sea hydrothermal crab, Bythograea thermydron, may encode three transposase isoforms from a single ORF.

Authors:  N Halaimia-Toumi; N Casse; M V Demattei; S Renault; E Pradier; Y Bigot; M Laulier
Journal:  J Mol Evol       Date:  2004-12       Impact factor: 2.395

Review 2.  Modern thoughts on an ancyent marinere: function, evolution, regulation.

Authors:  D L Hartl; A R Lohe; E R Lozovskaya
Journal:  Annu Rev Genet       Date:  1997       Impact factor: 16.830

3.  The ant genomes have been invaded by several types of mariner transposable elements.

Authors:  Pedro Lorite; Xulio Maside; Olivia Sanllorente; María I Torres; Georges Periquet; Teresa Palomeque
Journal:  Naturwissenschaften       Date:  2012-10-25

4.  Statistical method for testing the neutral mutation hypothesis by DNA polymorphism.

Authors:  F Tajima
Journal:  Genetics       Date:  1989-11       Impact factor: 4.562

5.  Identification of a mariner element from the tsetse fly, Glossina palpalis palpalis.

Authors:  A Blanchetot; R H Gooding
Journal:  Insect Mol Biol       Date:  1995-05       Impact factor: 3.585

6.  Statistical tests of neutrality of mutations.

Authors:  Y X Fu; W H Li
Journal:  Genetics       Date:  1993-03       Impact factor: 4.562

7.  Species sympatry and horizontal transfers of Mariner transposons in marine crustacean genomes.

Authors:  N Casse; Q T Bui; V Nicolas; S Renault; Y Bigot; M Laulier
Journal:  Mol Phylogenet Evol       Date:  2006-05-11       Impact factor: 4.286

8.  MAFFT multiple sequence alignment software version 7: improvements in performance and usability.

Authors:  Kazutaka Katoh; Daron M Standley
Journal:  Mol Biol Evol       Date:  2013-01-16       Impact factor: 16.240

9.  DNA primers for amplification of mitochondrial cytochrome c oxidase subunit I from diverse metazoan invertebrates.

Authors:  O Folmer; M Black; W Hoeh; R Lutz; R Vrijenhoek
Journal:  Mol Mar Biol Biotechnol       Date:  1994-10

10.  Regulation of DNA transposition by CpG methylation and chromatin structure in human cells.

Authors:  Tobias Jursch; Csaba Miskey; Zsuzsanna Izsvák; Zoltán Ivics
Journal:  Mob DNA       Date:  2013-05-15
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  1 in total

1.  Mitochondrial chromosome as a marker of animal migratory routes: DNA barcoding revealed Asian (non-African) origin of a tropical migrant butterfly Junonia orithya in south Israel.

Authors:  Vladimir A Lukhtanov; Elena A Pazhenkova; Asya V Novikova
Journal:  Comp Cytogenet       Date:  2016-12-01       Impact factor: 1.800

  1 in total

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