Literature DB >> 24720250

Wireframe and tensegrity DNA nanostructures.

Stephanie S Simmel1, Philipp C Nickels, Tim Liedl.   

Abstract

CONSPECTUS: Not only can triangulated wireframe network and tensegrity design be found in architecture, but it is also essential for the stability and organization of biological matter. Whether the scaffolding material is metal as in Buckminster Fuller's geodesic domes and Kenneth Snelson's floating compression sculptures or proteins like actin or spectrin making up the cytoskeleton of biological cells, wireframe and tensegrity construction can provide great stability while minimizing the material required. Given the mechanical properties of single- and double-stranded DNA, it is not surprising to find many variants of wireframe and tensegrity constructions in the emerging field of DNA nanotechnology, in which structures of almost arbitrary shape can be built with nanometer precision. The success of DNA self-assembly relies on the well-controlled hybridization of complementary DNA strands. Consequently, understanding the fundamental physical properties of these molecules is essential. Many experiments have shown that double-stranded DNA (in its most commonly occurring helical form, the B-form) behaves in a first approximation like a relatively stiff cylindrical beam with a persistence length of many times the length of its building blocks, the base pairs. However, it is harder to assign a persistence length to single-stranded DNA. Here, normally the Kuhn length is given, a measure that describes the length of individual rigid segments in a freely jointed chain. This length is on the order of a few nucleotides. Two immediate and important consequences arise from this high flexibility: single-stranded DNA is almost always present in a coiled conformation, and it behaves, just like all flexible polymers in solution, as an entropic spring. In this Account, we review the relation between the mechanical properties of DNA and design considerations for wireframe and tensegrity structures built from DNA. We illustrate various aspects of the successful evolution of DNA nanotechnology starting with the construction of four-way junctions and then allude to simple geometric objects such as the wireframe cube presented by Nadrian Seeman along with a variety of triangulated wireframe constructions. We examine DNA tensegrity triangles that self-assemble into crystals with sizes of several hundred micrometers as well as prestressed DNA origami tensegrity architecture, which uses single-stranded DNA with its entropic spring behavior as tension bearing components to organize stiff multihelix bundles in three dimensions. Finally, we discuss emerging applications of the aforementioned design principles in diverse fields such as diagnostics, drug delivery, or crystallography. Despite great advances in related research fields like protein and RNA engineering, DNA self-assembly is currently the most accessible technique to organize matter on the nanoscale, and we expect many more exciting applications to emerge.

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Year:  2014        PMID: 24720250     DOI: 10.1021/ar400319n

Source DB:  PubMed          Journal:  Acc Chem Res        ISSN: 0001-4842            Impact factor:   22.384


  10 in total

1.  Nanotechnology: Pathfinder for DNA constructs.

Authors:  Tim Liedl
Journal:  Nature       Date:  2015-07-23       Impact factor: 49.962

2.  Design, fabrication and applications of tetrahedral DNA nanostructure-based multifunctional complexes in drug delivery and biomedical treatment.

Authors:  Tao Zhang; Taoran Tian; Ronghui Zhou; Songhang Li; Wenjuan Ma; Yuxin Zhang; Nanxin Liu; Sirong Shi; Qianshun Li; Xueping Xie; Yichen Ge; Mengting Liu; Qi Zhang; Shiyu Lin; Xiaoxiao Cai; Yunfeng Lin
Journal:  Nat Protoc       Date:  2020-07-15       Impact factor: 13.491

3.  A Compact DNA Cube with Side Length 10 nm.

Authors:  Max B Scheible; Luvena L Ong; Johannes B Woehrstein; Ralf Jungmann; Peng Yin; Friedrich C Simmel
Journal:  Small       Date:  2015-08-21       Impact factor: 13.281

Review 4.  DNA origami nano-mechanics.

Authors:  Jiahao Ji; Deepak Karna; Hanbin Mao
Journal:  Chem Soc Rev       Date:  2021-11-01       Impact factor: 54.564

5.  Self-assembly of fully addressable DNA nanostructures from double crossover tiles.

Authors:  Wen Wang; Tong Lin; Suoyu Zhang; Tanxi Bai; Yongli Mi; Bryan Wei
Journal:  Nucleic Acids Res       Date:  2016-08-02       Impact factor: 16.971

6.  Artificial RNA Motifs Expand the Programmable Assembly between RNA Modules of a Bimolecular Ribozyme Leading to Application to RNA Nanostructure Design.

Authors:  Md Motiar Rahman; Shigeyoshi Matsumura; Yoshiya Ikawa
Journal:  Biology (Basel)       Date:  2017-10-30

Review 7.  Increasing Complexity in Wireframe DNA Nanostructures.

Authors:  Petteri Piskunen; Sami Nummelin; Boxuan Shen; Mauri A Kostiainen; Veikko Linko
Journal:  Molecules       Date:  2020-04-16       Impact factor: 4.411

8.  A universal platform for building molecular logic circuits based on a reconfigurable three-dimensional DNA nanostructure.

Authors:  Kaiyu He; Yong Li; Binbin Xiang; Peng Zhao; Yufang Hu; Yan Huang; Wang Li; Zhou Nie; Shouzhuo Yao
Journal:  Chem Sci       Date:  2015-04-08       Impact factor: 9.825

Review 9.  Applications of PNA-Based Artificial Restriction DNA Cutters.

Authors:  Narumi Shigi; Jun Sumaoka; Makoto Komiyama
Journal:  Molecules       Date:  2017-09-21       Impact factor: 4.411

Review 10.  Chiral Systems Made from DNA.

Authors:  David Winogradoff; Pin-Yi Li; Himanshu Joshi; Lauren Quednau; Christopher Maffeo; Aleksei Aksimentiev
Journal:  Adv Sci (Weinh)       Date:  2021-01-21       Impact factor: 16.806

  10 in total

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