Literature DB >> 24718238

Image reconstruction for structured-illumination microscopy with low signal level.

Kaiqin Chu, Paul J McMillan, Zachary J Smith, Jie Yin, Jeniffer Atkins, Paul Goodwin, Sebastian Wachsmann-Hogiu, Stephen Lane.   

Abstract

We report a new image processing technique for the structured illumination microscopy designed to work with low signals, with the goal of reducing photobleaching and phototoxicity of the sample. Using a pre-filtering process to estimate experimental parameters and total variation as a constraint to reconstruct, we obtain two orders of magnitude of exposure reduction while maintaining the resolution improvement and image quality compared to a standard structured illumination microscopy. The algorithm is validated on both fixed and live cell data with results confirming that we can image more than 15x more time points compared to the standard technique.

Year:  2014        PMID: 24718238     DOI: 10.1364/OE.22.008687

Source DB:  PubMed          Journal:  Opt Express        ISSN: 1094-4087            Impact factor:   3.894


  11 in total

1.  Optical volumetric projection for fast 3D imaging through circularly symmetric pupil engineering.

Authors:  Bo Cai; Xiaomin Zhai; Zeguan Wang; Yan Shen; Ronald Xu; Zachary J Smith; Quan Wen; Kaiqin Chu
Journal:  Biomed Opt Express       Date:  2018-01-04       Impact factor: 3.732

2.  Fast, long-term, super-resolution imaging with Hessian structured illumination microscopy.

Authors:  Xiaoshuai Huang; Junchao Fan; Liuju Li; Haosen Liu; Runlong Wu; Yi Wu; Lisi Wei; Heng Mao; Amit Lal; Peng Xi; Liqiang Tang; Yunfeng Zhang; Yanmei Liu; Shan Tan; Liangyi Chen
Journal:  Nat Biotechnol       Date:  2018-04-11       Impact factor: 54.908

3.  Improved resolution in 3D structured illumination microscopy using 3D model-based restoration with positivity-constraint.

Authors:  Cong T S Van; Chrysanthe Preza
Journal:  Biomed Opt Express       Date:  2021-11-19       Impact factor: 3.732

4.  Imaging tissues and cells beyond the diffraction limit with structured illumination microscopy and Bayesian image reconstruction.

Authors:  Jakub Pospíšil; Tomáš Lukeš; Justin Bendesky; Karel Fliegel; Kathrin Spendier; Guy M Hagen
Journal:  Gigascience       Date:  2019-01-01       Impact factor: 6.524

5.  Optimal 2D-SIM reconstruction by two filtering steps with Richardson-Lucy deconvolution.

Authors:  Victor Perez; Bo-Jui Chang; Ernst Hans Karl Stelzer
Journal:  Sci Rep       Date:  2016-11-16       Impact factor: 4.379

6.  GPU-accelerated real-time reconstruction in Python of three-dimensional datasets from structured illumination microscopy with hexagonal patterns.

Authors:  Hai Gong; Wenjun Guo; Mark A A Neil
Journal:  Philos Trans A Math Phys Eng Sci       Date:  2021-04-26       Impact factor: 4.226

7.  High-fidelity structured illumination microscopy by point-spread-function engineering.

Authors:  Gang Wen; Simin Li; Linbo Wang; Xiaohu Chen; Zhenglong Sun; Yong Liang; Xin Jin; Yifan Xing; Yaming Jiu; Yuguo Tang; Hui Li
Journal:  Light Sci Appl       Date:  2021-04-01       Impact factor: 17.782

8.  Open-source image reconstruction of super-resolution structured illumination microscopy data in ImageJ.

Authors:  Marcel Müller; Viola Mönkemöller; Simon Hennig; Wolfgang Hübner; Thomas Huser
Journal:  Nat Commun       Date:  2016-03-21       Impact factor: 14.919

9.  Subnanometer-resolved chemical imaging via multivariate analysis of tip-enhanced Raman maps.

Authors:  Song Jiang; Xianbiao Zhang; Yao Zhang; Chunrui Hu; Rui Zhang; Yang Zhang; Yuan Liao; Zachary J Smith; Zhenchao Dong; J G Hou
Journal:  Light Sci Appl       Date:  2017-11-17       Impact factor: 17.782

10.  Nonsmooth Convex Optimization for Structured Illumination Microscopy Image Reconstruction.

Authors:  Jérôme Boulanger; Nelly Pustelnik; Laurent Condat; Lucie Sengmanivong; Tristan Piolot
Journal:  Inverse Probl       Date:  2018-07-12       Impact factor: 2.408

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