Literature DB >> 24711227

Entropy is key to the formation of pentacyclic terpenoids by enzyme-catalyzed polycyclization.

Per-Olof Syrén1, Stephan C Hammer, Birgit Claasen, Bernhard Hauer.   

Abstract

Polycyclizations constitute a cornerstone of chemistry and biology. Multicyclic scaffolds are generated by terpene cyclase enzymes in nature through a carbocationic polycyclization cascade of a prefolded polyisoprene backbone, for which electrostatic stabilization of transient carbocationic species is believed to drive catalysis. Computational studies and site-directed mutagenesis were used to assess the contribution of entropy to the polycyclization cascade catalyzed by the triterpene cyclase from A. acidocaldarius. Our results show that entropy contributes significantly to the rate enhancement through the release of water molecules through specific channels. A single rational point mutation that results in the disruption of one of these water channels decreased the entropic contribution to catalysis by 60 kcal mol(-1) . This work demonstrates that entropy is the key to enzyme-catalyzed polycyclizations, which are highly relevant in biology since 90 % of all natural products contain a cyclic subunit.
© 2014 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

Entities:  

Keywords:  biosynthesis; enzyme catalysis; polycyclization; reaction mechanisms; thermodynamics

Mesh:

Substances:

Year:  2014        PMID: 24711227     DOI: 10.1002/anie.201402087

Source DB:  PubMed          Journal:  Angew Chem Int Ed Engl        ISSN: 1433-7851            Impact factor:   15.336


  7 in total

1.  Squalene hopene cyclases are protonases for stereoselective Brønsted acid catalysis.

Authors:  Stephan C Hammer; Antonija Marjanovic; Jörg M Dominicus; Bettina M Nestl; Bernhard Hauer
Journal:  Nat Chem Biol       Date:  2014-12-15       Impact factor: 15.040

2.  Key difference between transition state stabilization and ground state destabilization: increasing atomic charge densities before or during enzyme-substrate binding.

Authors:  Deliang Chen; Yibao Li; Xun Li; Xuechuan Hong; Xiaolin Fan; Tor Savidge
Journal:  Chem Sci       Date:  2022-06-21       Impact factor: 9.969

3.  Unraveling Entropic Rate Acceleration Induced by Solvent Dynamics in Membrane Enzymes.

Authors:  Charlotte Kürten; Per-Olof Syrén
Journal:  J Vis Exp       Date:  2016-01-16       Impact factor: 1.355

4.  Separating Thermodynamics from Kinetics-A New Understanding of the Transketolase Reaction.

Authors:  Stefan R Marsden; Lorina Gjonaj; Stephen J Eustace; Ulf Hanefeld
Journal:  ChemCatChem       Date:  2017-04-13       Impact factor: 5.686

5.  In Silico Studies of Small Molecule Interactions with Enzymes Reveal Aspects of Catalytic Function.

Authors:  Rajni Verma; Katie Mitchell-Koch
Journal:  Catalysts       Date:  2017-07-14       Impact factor: 4.146

6.  Exploring Solanum tuberosum Epoxide Hydrolase Internal Architecture by Water Molecules Tracking.

Authors:  Karolina Mitusińska; Tomasz Magdziarz; Maria Bzówka; Agnieszka Stańczak; Artur Gora
Journal:  Biomolecules       Date:  2018-11-12

7.  Protonation-Initiated Cyclization by a Class II Terpene Cyclase Assisted by Tunneling.

Authors:  Adam Eriksson; Charlotte Kürten; Per-Olof Syrén
Journal:  Chembiochem       Date:  2017-11-03       Impact factor: 3.164

  7 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.