Literature DB >> 24710828

Identifying the neuroanatomical basis of cognitive impairment in Alzheimer's disease by correlation- and nonlinearity-aware sparse Bayesian learning.

Jing Wan, Zhilin Zhang, Bhaskar D Rao, Shiaofen Fang, Jingwen Yan, Andrew J Saykin, Li Shen.   

Abstract

Predicting cognitive performance of subjects from their magnetic resonance imaging (MRI) measures and identifying relevant imaging biomarkers are important research topics in the study of Alzheimer's disease. Traditionally, this task is performed by formulating a linear regression problem. Recently, it is found that using a linear sparse regression model can achieve better prediction accuracy. However, most existing studies only focus on the exploitation of sparsity of regression coefficients, ignoring useful structure information in regression coefficients. Also, these linear sparse models may not capture more complicated and possibly nonlinear relationships between cognitive performance and MRI measures. Motivated by these observations, in this work we build a sparse multivariate regression model for this task and propose an empirical sparse Bayesian learning algorithm. Different from existing sparse algorithms, the proposed algorithm models the response as a nonlinear function of the predictors by extending the predictor matrix with block structures. Further, it exploits not only inter-vector correlation among regression coefficient vectors, but also intra-block correlation in each regression coefficient vector. Experiments on the Alzheimer's Disease Neuroimaging Initiative database showed that the proposed algorithm not only achieved better prediction performance than state-of-the-art competitive methods, but also effectively identified biologically meaningful patterns.

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Year:  2014        PMID: 24710828      PMCID: PMC4113117          DOI: 10.1109/TMI.2014.2314712

Source DB:  PubMed          Journal:  IEEE Trans Med Imaging        ISSN: 0278-0062            Impact factor:   10.048


  32 in total

1.  Whole brain segmentation: automated labeling of neuroanatomical structures in the human brain.

Authors:  Bruce Fischl; David H Salat; Evelina Busa; Marilyn Albert; Megan Dieterich; Christian Haselgrove; Andre van der Kouwe; Ron Killiany; David Kennedy; Shuna Klaveness; Albert Montillo; Nikos Makris; Bruce Rosen; Anders M Dale
Journal:  Neuron       Date:  2002-01-31       Impact factor: 17.173

Review 2.  Clinical Core of the Alzheimer's Disease Neuroimaging Initiative: progress and plans.

Authors:  Paul S Aisen; Ronald C Petersen; Michael C Donohue; Anthony Gamst; Rema Raman; Ronald G Thomas; Sarah Walter; John Q Trojanowski; Leslie M Shaw; Laurel A Beckett; Clifford R Jack; William Jagust; Arthur W Toga; Andrew J Saykin; John C Morris; Robert C Green; Michael W Weiner
Journal:  Alzheimers Dement       Date:  2010-05       Impact factor: 21.566

3.  Trail Making Test A and B: normative data stratified by age and education.

Authors:  Tom N Tombaugh
Journal:  Arch Clin Neuropsychol       Date:  2004-03       Impact factor: 2.813

4.  Robust Bayesian estimation of the location, orientation, and time course of multiple correlated neural sources using MEG.

Authors:  David P Wipf; Julia P Owen; Hagai T Attias; Kensuke Sekihara; Srikantan S Nagarajan
Journal:  Neuroimage       Date:  2009-07-10       Impact factor: 6.556

5.  High-dimensional pattern regression using machine learning: from medical images to continuous clinical variables.

Authors:  Ying Wang; Yong Fan; Priyanka Bhatt; Christos Davatzikos
Journal:  Neuroimage       Date:  2010-01-04       Impact factor: 6.556

6.  Baseline MRI predictors of conversion from MCI to probable AD in the ADNI cohort.

Authors:  Shannon L Risacher; Andrew J Saykin; John D West; Li Shen; Hiram A Firpi; Brenna C McDonald
Journal:  Curr Alzheimer Res       Date:  2009-08       Impact factor: 3.498

7.  Temporally-constrained group sparse learning for longitudinal data analysis.

Authors:  Daoqiang Zhang; Jun Liu; Dinggang Shen
Journal:  Med Image Comput Comput Assist Interv       Date:  2012

8.  Sparse Multi-Task Regression and Feature Selection to Identify Brain Imaging Predictors for Memory Performance.

Authors:  Hua Wang; Feiping Nie; Heng Huang; Shannon Risacher; Chris Ding; Andrew J Saykin; Li Shen
Journal:  Proc IEEE Int Conf Comput Vis       Date:  2011

9.  Volumetry of amygdala and hippocampus and memory performance in Alzheimer's disease.

Authors:  Michael Basso; John Yang; Lauren Warren; Martha G MacAvoy; Pradeep Varma; Richard A Bronen; Christopher H van Dyck
Journal:  Psychiatry Res       Date:  2006-03-09       Impact factor: 3.222

10.  Automatic classification of MR scans in Alzheimer's disease.

Authors:  Stefan Klöppel; Cynthia M Stonnington; Carlton Chu; Bogdan Draganski; Rachael I Scahill; Jonathan D Rohrer; Nick C Fox; Clifford R Jack; John Ashburner; Richard S J Frackowiak
Journal:  Brain       Date:  2008-01-17       Impact factor: 13.501

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  12 in total

Review 1.  Recent publications from the Alzheimer's Disease Neuroimaging Initiative: Reviewing progress toward improved AD clinical trials.

Authors:  Michael W Weiner; Dallas P Veitch; Paul S Aisen; Laurel A Beckett; Nigel J Cairns; Robert C Green; Danielle Harvey; Clifford R Jack; William Jagust; John C Morris; Ronald C Petersen; Andrew J Saykin; Leslie M Shaw; Arthur W Toga; John Q Trojanowski
Journal:  Alzheimers Dement       Date:  2017-03-22       Impact factor: 21.566

2.  Cortical surface biomarkers for predicting cognitive outcomes using group l2,1 norm.

Authors:  Jingwen Yan; Taiyong Li; Hua Wang; Heng Huang; Jing Wan; Kwangsik Nho; Sungeun Kim; Shannon L Risacher; Andrew J Saykin; Li Shen
Journal:  Neurobiol Aging       Date:  2014-08-29       Impact factor: 4.673

3.  Interactive Machine Learning by Visualization: A Small Data Solution.

Authors:  Huang Li; Shiaofen Fang; Snehasis Mukhopadhyay; Andrew J Saykin; Li Shen
Journal:  Proc IEEE Int Conf Big Data       Date:  2019-01-24

4.  Fused Group Lasso Regularized Multi-Task Feature Learning and Its Application to the Cognitive Performance Prediction of Alzheimer's Disease.

Authors:  Xiaoli Liu; Peng Cao; Jianzhong Wang; Jun Kong; Dazhe Zhao
Journal:  Neuroinformatics       Date:  2019-04

5.  Temporally Constrained Group Sparse Learning for Longitudinal Data Analysis in Alzheimer's Disease.

Authors:  Biao Jie; Mingxia Liu; Jun Liu; Daoqiang Zhang; Dinggang Shen
Journal:  IEEE Trans Biomed Eng       Date:  2016-04-13       Impact factor: 4.538

6.  Predicting individualized clinical measures by a generalized prediction framework and multimodal fusion of MRI data.

Authors:  Xing Meng; Rongtao Jiang; Dongdong Lin; Juan Bustillo; Thomas Jones; Jiayu Chen; Qingbao Yu; Yuhui Du; Yu Zhang; Tianzi Jiang; Jing Sui; Vince D Calhoun
Journal:  Neuroimage       Date:  2016-05-10       Impact factor: 6.556

7.  Linearized and Kernelized Sparse Multitask Learning for Predicting Cognitive Outcomes in Alzheimer's Disease.

Authors:  Xiaoli Liu; Peng Cao; Jinzhu Yang; Dazhe Zhao
Journal:  Comput Math Methods Med       Date:  2018-01-24       Impact factor: 2.238

8.  Forecasting the progression of Alzheimer's disease using neural networks and a novel preprocessing algorithm.

Authors:  Jack Albright
Journal:  Alzheimers Dement (N Y)       Date:  2019-09-25

9.  Group Guided Fused Laplacian Sparse Group Lasso for Modeling Alzheimer's Disease Progression.

Authors:  Xiaoli Liu; Jianzhong Wang; Fulong Ren; Jun Kong
Journal:  Comput Math Methods Med       Date:  2020-02-20       Impact factor: 2.238

10.  A method to compare the discriminatory power of data-driven methods: Application to ICA and IVA.

Authors:  Yuri Levin-Schwartz; Vince D Calhoun; Tülay Adalı
Journal:  J Neurosci Methods       Date:  2018-10-30       Impact factor: 2.390

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