Literature DB >> 24706894

Strong evidence for protein epistasis, weak evidence against it.

David D Pollock1, Richard A Goldstein.   

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Year:  2014        PMID: 24706894      PMCID: PMC3992644          DOI: 10.1073/pnas.1401112111

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


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2.  Do viral proteins possess unique biophysical features?

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3.  Mutational effects on stability are largely conserved during protein evolution.

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4.  Protein 3D structure computed from evolutionary sequence variation.

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Journal:  PLoS One       Date:  2011-12-07       Impact factor: 3.240

  4 in total
  19 in total

1.  Contingency and entrenchment in protein evolution under purifying selection.

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2.  The Adaptive Evolution Database (TAED): A New Release of a Database of Phylogenetically Indexed Gene Families from Chordates.

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4.  Epistasis and the Dynamics of Reversion in Molecular Evolution.

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Journal:  Genetics       Date:  2016-05-18       Impact factor: 4.562

5.  Sequence dependencies and biophysical features both govern cleavage of diverse cut-sites by HIV protease.

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Review 6.  Shifts in amino acid preferences as proteins evolve: A synthesis of experimental and theoretical work.

Authors:  Noor Youssef; Edward Susko; Andrew J Roger; Joseph P Bielawski
Journal:  Protein Sci       Date:  2021-08-12       Impact factor: 6.993

7.  Nonadaptive Amino Acid Convergence Rates Decrease over Time.

Authors:  Richard A Goldstein; Stephen T Pollard; Seena D Shah; David D Pollock
Journal:  Mol Biol Evol       Date:  2015-03-03       Impact factor: 16.240

8.  An experimentally informed evolutionary model improves phylogenetic fit to divergent lactamase homologs.

Authors:  Jesse D Bloom
Journal:  Mol Biol Evol       Date:  2014-07-24       Impact factor: 16.240

9.  Mutational studies on resurrected ancestral proteins reveal conservation of site-specific amino acid preferences throughout evolutionary history.

Authors:  Valeria A Risso; Fadia Manssour-Triedo; Asunción Delgado-Delgado; Rocio Arco; Alicia Barroso-delJesus; Alvaro Ingles-Prieto; Raquel Godoy-Ruiz; Jose A Gavira; Eric A Gaucher; Beatriz Ibarra-Molero; Jose M Sanchez-Ruiz
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10.  A Bayesian model for detection of high-order interactions among genetic variants in genome-wide association studies.

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Journal:  BMC Genomics       Date:  2015-11-25       Impact factor: 3.969

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