Literature DB >> 24704746

CRISPR-Cas systems: beyond adaptive immunity.

Edze R Westra1, Angus Buckling1, Peter C Fineran2.   

Abstract

The discovery of CRISPR-Cas (clustered, regularly interspaced short palindromic repeats-CRISPR-associated proteins) adaptive immune systems in prokaryotes has been one of the most exciting advances in microbiology in the past decade. Their role in host protection against mobile genetic elements is now well established, but there is mounting evidence that these systems modulate other processes, such as the genetic regulation of group behaviour and virulence, DNA repair and genome evolution. In this Progress article, we discuss recent studies that have provided insights into these unconventional CRISPR-Cas functions and consider their potential evolutionary implications. Understanding the role of CRISPR-Cas in these processes will improve our understanding of the evolution and maintenance of CRISPR-Cas systems in prokaryotic genomes.

Mesh:

Year:  2014        PMID: 24704746     DOI: 10.1038/nrmicro3241

Source DB:  PubMed          Journal:  Nat Rev Microbiol        ISSN: 1740-1526            Impact factor:   60.633


  101 in total

1.  Spatial control of cell differentiation in Myxococcus xanthus.

Authors:  B Julien; A D Kaiser; A Garza
Journal:  Proc Natl Acad Sci U S A       Date:  2000-08-01       Impact factor: 11.205

2.  A DNA repair system specific for thermophilic Archaea and bacteria predicted by genomic context analysis.

Authors:  Kira S Makarova; L Aravind; Nick V Grishin; Igor B Rogozin; Eugene V Koonin
Journal:  Nucleic Acids Res       Date:  2002-01-15       Impact factor: 16.971

Review 3.  Bacteriophage resistance mechanisms.

Authors:  Simon J Labrie; Julie E Samson; Sylvain Moineau
Journal:  Nat Rev Microbiol       Date:  2010-03-29       Impact factor: 60.633

Review 4.  Ribonucleases in bacterial toxin-antitoxin systems.

Authors:  Gregory M Cook; Jennifer R Robson; Rebekah A Frampton; Joanna McKenzie; Rita Przybilski; Peter C Fineran; Vickery L Arcus
Journal:  Biochim Biophys Acta       Date:  2013-02-21

5.  CRISPR distribution within the Escherichia coli species is not suggestive of immunity-associated diversifying selection.

Authors:  Marie Touchon; Sophie Charpentier; Olivier Clermont; Eduardo P C Rocha; Erick Denamur; Catherine Branger
Journal:  J Bacteriol       Date:  2011-03-18       Impact factor: 3.490

6.  Diversity of CRISPR loci in Escherichia coli.

Authors:  C Díez-Villaseñor; C Almendros; J García-Martínez; F J M Mojica
Journal:  Microbiology       Date:  2010-02-04       Impact factor: 2.777

7.  The small, slow and specialized CRISPR and anti-CRISPR of Escherichia and Salmonella.

Authors:  Marie Touchon; Eduardo P C Rocha
Journal:  PLoS One       Date:  2010-06-15       Impact factor: 3.240

8.  CRISPR interference limits horizontal gene transfer in staphylococci by targeting DNA.

Authors:  Luciano A Marraffini; Erik J Sontheimer
Journal:  Science       Date:  2008-12-19       Impact factor: 47.728

9.  Regulation of dev, an operon that includes genes essential for Myxococcus xanthus development and CRISPR-associated genes and repeats.

Authors:  Poorna Viswanathan; Kimberly Murphy; Bryan Julien; Anthony G Garza; Lee Kroos
Journal:  J Bacteriol       Date:  2007-03-16       Impact factor: 3.490

10.  Genetic architecture of thermal adaptation in Escherichia coli.

Authors:  M M Riehle; A F Bennett; A D Long
Journal:  Proc Natl Acad Sci U S A       Date:  2001-01-09       Impact factor: 11.205

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  109 in total

1.  Metagenomic reconstructions of bacterial CRISPR loci constrain population histories.

Authors:  Christine L Sun; Brian C Thomas; Rodolphe Barrangou; Jillian F Banfield
Journal:  ISME J       Date:  2015-09-22       Impact factor: 10.302

2.  Diversity of CRISPR/Cas system in Clostridium perfringens.

Authors:  Jinzhao Long; Yake Xu; Liuyang Ou; Haiyan Yang; Yuanlin Xi; Shuaiyin Chen; Guangcai Duan
Journal:  Mol Genet Genomics       Date:  2019-05-27       Impact factor: 3.291

3.  The dev Operon Regulates the Timing of Sporulation during Myxococcus xanthus Development.

Authors:  Ramya Rajagopalan; Lee Kroos
Journal:  J Bacteriol       Date:  2017-04-25       Impact factor: 3.490

4.  Minimal genomes of mycoplasma-related endobacteria are plastic and contain host-derived genes for sustained life within Glomeromycota.

Authors:  Mizue Naito; Joseph B Morton; Teresa E Pawlowska
Journal:  Proc Natl Acad Sci U S A       Date:  2015-05-11       Impact factor: 11.205

5.  Genome-wide correlation analysis suggests different roles of CRISPR-Cas systems in the acquisition of antibiotic resistance genes in diverse species.

Authors:  Saadlee Shehreen; Te-Yuan Chyou; Peter C Fineran; Chris M Brown
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2019-05-13       Impact factor: 6.237

6.  CRISPR Arrays Away from cas Genes.

Authors:  Sergey A Shmakov; Irina Utkina; Yuri I Wolf; Kira S Makarova; Konstantin V Severinov; Eugene V Koonin
Journal:  CRISPR J       Date:  2020-12

7.  Diversity of the type I-U CRISPR-Cas system in Bifidobacterium.

Authors:  Liuyang Ou; Jinzhao Long; Yanli Teng; Haiyan Yang; Yuanlin Xi; Guangcai Duan; Shuaiyin Chen
Journal:  Arch Microbiol       Date:  2021-04-09       Impact factor: 2.552

Review 8.  Mechanisms and consequences of diversity-generating immune strategies.

Authors:  Edze R Westra; David Sünderhauf; Mariann Landsberger; Angus Buckling
Journal:  Nat Rev Immunol       Date:  2017-08-07       Impact factor: 53.106

Review 9.  Unveiling Human Non-Random Genome Editing Mechanisms Activated in Response to Chronic Environmental Changes: I. Where Might These Mechanisms Come from and What Might They Have Led To?

Authors:  Loris Zamai
Journal:  Cells       Date:  2020-10-27       Impact factor: 6.600

Review 10.  RNA-mediated regulation in Gram-positive pathogens: an overview punctuated with examples from the group A Streptococcus.

Authors:  Eric W Miller; Tram N Cao; Kathryn J Pflughoeft; Paul Sumby
Journal:  Mol Microbiol       Date:  2014-08-21       Impact factor: 3.501

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