| Literature DB >> 24701198 |
Konstantin Berlin1, Nail A Gumerov2, David Fushman1, Ramani Duraiswami2.
Abstract
The need for fast approximate algorithms for Debye summation arises in computations performed in crystallography, small/wide-angle X-ray scattering and small-angle neutron scattering. When integrated into structure refinement protocols these algorithms can provide significant speed up over direct all-atom-to-all-atom computation. However, these protocols often employ an iterative gradient-based optimization procedure, which then requires derivatives of the profile with respect to atomic coordinates. This article presents an accurate, O(N) cost algorithm for the computation of scattering profile derivatives. The results reported here show orders of magnitude improvement in computational efficiency, while maintaining the prescribed accuracy. This opens the possibility to efficiently integrate small-angle scattering data into the structure determination and refinement of macromolecular systems.Keywords: Jacobian; gradients; small-angle scattering; wide-angle scattering
Year: 2014 PMID: 24701198 PMCID: PMC3970052 DOI: 10.1107/S1600576714004671
Source DB: PubMed Journal: J Appl Crystallogr ISSN: 0021-8898 Impact factor: 3.304