Literature DB >> 24700556

H3.3 turnover: a mechanism to poise chromatin for transcription, or a response to open chromatin?

Chang Huang1, Bing Zhu.   

Abstract

Histone H3.3 turnover displays distinct dynamics at various genomic elements such as promoters, enhancers, gene bodies, and heterochromatic regions, suggesting that it is differentially regulated according to chromatin context. Incorporation of variant histones into chromatin provides a mechanism to modulate chromatin states in addition to histone modifications. The replication-independent deposition and replacement of histone variant H3.3, i.e. H3.3 turnover, is mainly associated with transcriptional activity. H3.3 or H3.3-like histone turnover has been studied in various organisms from yeast to mammals. Here, we review the recent progress on this topic. The diversified turnover profiles of H3.3, and their corresponding underlying mechanisms, may reflect distinct requirements for chromatin accessibility in different biological events.
© 2014 WILEY Periodicals, Inc.

Entities:  

Keywords:  H3.3; histone variant; turnover

Mesh:

Substances:

Year:  2014        PMID: 24700556     DOI: 10.1002/bies.201400005

Source DB:  PubMed          Journal:  Bioessays        ISSN: 0265-9247            Impact factor:   4.345


  17 in total

1.  Rpp29 regulates histone H3.3 chromatin assembly through transcriptional mechanisms.

Authors:  Prashanth Krishna Shastrula; Peder J Lund; Benjamin A Garcia; Susan M Janicki
Journal:  J Biol Chem       Date:  2018-06-19       Impact factor: 5.157

Review 2.  The tale of a tail: histone H4 acetylation and the repair of DNA breaks.

Authors:  Surbhi Dhar; Ozge Gursoy-Yuzugullu; Ramya Parasuram; Brendan D Price
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2017-10-05       Impact factor: 6.237

3.  Postmitotic accumulation of histone variant H3.3 in new cortical neurons establishes neuronal chromatin, transcriptome, and identity.

Authors:  Owen H Funk; Yaman Qalieh; Daniel Z Doyle; Mandy M Lam; Kenneth Y Kwan
Journal:  Proc Natl Acad Sci U S A       Date:  2022-08-05       Impact factor: 12.779

4.  Overlapping functions of RBBP4 and RBBP7 in regulating cell proliferation and histone H3.3 deposition during mouse preimplantation development.

Authors:  Lieying Xiao; Yanna Dang; Bingjie Hu; Lei Luo; Panpan Zhao; Shaohua Wang; Kun Zhang
Journal:  Epigenetics       Date:  2021-11-10       Impact factor: 4.861

5.  SWI/SNF chromatin remodeling controls Notch-responsive enhancer accessibility.

Authors:  Zoe Pillidge; Sarah J Bray
Journal:  EMBO Rep       Date:  2019-03-26       Impact factor: 8.807

Review 6.  Histone chaperone networks shaping chromatin function.

Authors:  Colin M Hammond; Caroline B Strømme; Hongda Huang; Dinshaw J Patel; Anja Groth
Journal:  Nat Rev Mol Cell Biol       Date:  2017-01-05       Impact factor: 94.444

Review 7.  A Comprehensive Toolbox to Analyze Enhancer-Promoter Functions.

Authors:  Benedetto Daniele Giaimo; Tobias Friedrich; Tilman Borggrefe
Journal:  Methods Mol Biol       Date:  2021

Review 8.  Histone H3 mutations--a special role for H3.3 in tumorigenesis?

Authors:  Satish Kallappagoudar; Rajesh K Yadav; Brandon R Lowe; Janet F Partridge
Journal:  Chromosoma       Date:  2015-03-14       Impact factor: 4.316

9.  Genome-wide analysis of H3.3 dissociation reveals high nucleosome turnover at distal regulatory regions of embryonic stem cells.

Authors:  Misook Ha; Daniel C Kraushaar; Keji Zhao
Journal:  Epigenetics Chromatin       Date:  2014-12-20       Impact factor: 4.954

10.  H3.3 demarcates GC-rich coding and subtelomeric regions and serves as potential memory mark for virulence gene expression in Plasmodium falciparum.

Authors:  Sabine Anne-Kristin Fraschka; Rob Wilhelmus Maria Henderson; Richárd Bártfai
Journal:  Sci Rep       Date:  2016-08-24       Impact factor: 4.379

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